Thriving in the Cold: Glacial Expansion and Post-Glacial Contraction of a Temperate Terrestrial Salamander (Plethodon serratus)

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

What are the consequences of combining nuclear and mitochondrial data for phylogenetic analysis? Lessons from Plethodonsalamanders and 13 other vertebrate clades

(2011) M Caitlin Fisher-Reid et al.   BMC EVOLUTIONARY BIOLOGY

Conservation genetics of an endemic mountaintop salamander with an extremely limited range

(2011) Claire S. O. Bayer et al.   CONSERVATION GENETICS

Multiple lines of evidence for demographic and range expansion of a temperate species (Hyla sarda) during the last glaciation

(2011) ROBERTA BISCONTI et al.   MOLECULAR ECOLOGY

Local-scale environmental variation generates highly divergent lineages associated with stream drainages in a terrestrial salamander, Plethodon caddoensis

(2011) Donald B. Shepard et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Taxonomic Revision of Desmognathus wrighti (Caudata: Plethodontidae)

(2010) Erica J. Crespi et al.   HERPETOLOGICA

Mapping amphibian contact zones and phylogeographical break hotspots across the United States

(2010) LESLIE J. RISSLER et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Conservation genetics of Boelen’s python (Morelia boeleni) from New Guinea: reduced genetic diversity and divergence of captive and wild animals

(2009) Christopher C. Austin et al.   CONSERVATION GENETICS

Phylogeographic and demographic effects of Pleistocene climatic fluctuations in a montane salamander,Plethodon fourchensis

(2009) DONALD B. SHEPARD et al.   MOLECULAR ECOLOGY

Late Pleistocene and Holocene environments of the Southeastern United States from the stratigraphy and pollen content of a peat deposit on the Georgia Coastal Plain

(2009) Heidi K. LaMoreaux et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species

(2008) Jonathan B. Losos   ECOLOGY LETTERS

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

Lineage diversification and historical demography of a sky island salamander,Plethodon ouachitae, from the Interior Highlands

(2008) DONALD B. SHEPARD et al.   MOLECULAR ECOLOGY