De Novo Assembly and Annotation of the Chinese Chive (Allium tuberosum Rottler ex Spr.) Transcriptome Using the Illumina Platform

Integrated transcriptome catalogue and organ-specific profiling of gene expression in fertile garlic (Allium sativum L.)

(2015) Rina Kamenetsky et al.   BMC GENOMICS

Development of transcriptome shotgun assembly-derived markers in bunching onion (Allium fistulosum)

(2015) Hikaru Tsukazaki et al.   MOLECULAR BREEDING

De Novo Assembly of Auricularia polytricha Transcriptome Using Illumina Sequencing for Gene Discovery and SSR Marker Identification

(2014) Yan Zhou et al.   PLoS One

Transcriptome Sequencing and De Novo Analysis of Youngia japonica Using the Illumina Platform

(2014) Yulan Peng et al.   PLoS One

High-Throughput Sequencing and De Novo Assembly of Brassica oleracea var. Capitata L. for Transcriptome Analysis

(2014) Hyun A. Kim et al.   PLoS One

De Novo Assembly and Characterization of the Fruit Transcriptome of Chinese Jujube (Ziziphus jujuba Mill.) Using 454 Pyrosequencing and the Development of Novel Tri-Nucleotide SSR Markers

(2014) Yingyue Li et al.   PLoS One

RNA-Seq Analysis and De Novo Transcriptome Assembly of Jerusalem Artichoke (Helianthus tuberosus Linne)

(2014) Won Yong Jung et al.   PLoS One

RNA-Seq Reveals Leaf Cuticular Wax-Related Genes in Welsh Onion

(2014) Qianchun Liu et al.   PLoS One

De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana

(2013) Stephen M Gross et al.   BMC GENOMICS

Trascriptome analysis of the Pacific white shrimp Litopenaeus vannamei exposed to nitrite by RNA-seq

(2013) Hui Guo et al.   FISH & SHELLFISH IMMUNOLOGY

De novo Sequence Assembly and Characterization of Lycoris aurea Transcriptome Using GS FLX Titanium Platform of 454 Pyrosequencing

(2013) Ren Wang et al.   PLoS One

Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa

(2012) Arwa Shahin et al.   BMC GENOMICS

De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)

(2012) Dejun Li et al.   BMC GENOMICS

De novo assembly and characterization of the garlic (Allium sativum) bud transcriptome by Illumina sequencing

(2012) Xiudong Sun et al.   PLANT CELL REPORTS

Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences

(2011) Juan E. Zalapa et al.   AMERICAN JOURNAL OF BOTANY

Next-generation sequencing technologies for gene expression profiling in plants

(2011) M. Jain   Briefings in Functional Genomics

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Shedding light on an extremophile lifestyle through transcriptomics

(2009) M. Dassanayake et al.   NEW PHYTOLOGIST