Pathway Relevance Ranking for Tumor Samples through Network-Based Data Integration

Notch3 Pathway Alterations in Ovarian Cancer

(2014) W. Hu et al.   CANCER RESEARCH

Estrogen signaling crosstalk: Implications for endocrine resistance in ovarian cancer

(2014) Jennifer R. Ribeiro et al.   JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY

Similarity network fusion for aggregating data types on a genomic scale

(2014) Bo Wang et al.   NATURE METHODS

Notch signaling in serous ovarian cancer

(2014) Jolijn W Groeneweg et al.   Journal of Ovarian Research

EPSILON: an eQTL prioritization framework using similarity measures derived from local networks

(2013) Lieven P. C. Verbeke et al.   BIOINFORMATICS

The Wnt/β-catenin pathway in ovarian cancer: A review

(2013) Rebecca C. Arend et al.   GYNECOLOGIC ONCOLOGY

Mutational heterogeneity in cancer and the search for new cancer-associated genes

(2013) Michael S. Lawrence et al.   NATURE

Network-based stratification of tumor mutations

(2013) Matan Hofree et al.   NATURE METHODS

Simultaneous Identification of Multiple Driver Pathways in Cancer

(2013) Mark D. M. Leiserson et al.   PLoS Computational Biology

PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis

(2012) Sam Ng et al.   BIOINFORMATICS

A network-based, integrative study to identify core biological pathways that drive breast cancer clinical subtypes

(2012) B Dutta et al.   BRITISH JOURNAL OF CANCER

The rebel angel: mutant p53 as the driving oncogene in breast cancer

(2012) D. Walerych et al.   CARCINOGENESIS

MuSiC: Identifying mutational significance in cancer genomes

(2012) N. D. Dees et al.   GENOME RESEARCH

Network-Induced Classification Kernels for Gene Expression Profile Analysis

(2012) Ofer Lavi et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

Architecture of the human regulatory network derived from ENCODE data

(2012) Mark B. Gerstein et al.   NATURE

An experimental investigation of kernels on graphs for collaborative recommendation and semisupervised classification

(2012) François Fouss et al.   NEURAL NETWORKS

De novo discovery of mutated driver pathways in cancer

(2011) F. Vandin et al.   GENOME RESEARCH

Mutual exclusivity analysis identifies oncogenic network modules

(2011) G. Ciriello et al.   GENOME RESEARCH

Integrated genomic analyses of ovarian carcinoma

(2011) D. Bell et al.   NATURE

GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers

(2011) Craig H Mermel et al.   GENOME BIOLOGY

Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM

(2010) Charles J. Vaske et al.   BIOINFORMATICS

Candidate gene prioritization by network analysis of differential expression using machine learning approaches

(2010) Daniela Nitsch et al.   BMC BIOINFORMATICS

Notch 1 signaling is active in ovarian cancer

(2010) Stephen L. Rose et al.   GYNECOLOGIC ONCOLOGY

Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis

(2009) Ronglai Shen et al.   BIOINFORMATICS

ErbB receptors and signaling pathways in cancer

(2009) Nancy E Hynes et al.   CURRENT OPINION IN CELL BIOLOGY

Cooperation of Notch and Ras/MAPK signaling pathways in human breast carcinogenesis

(2009) Suruchi Mittal et al.   Molecular Cancer

Smad2 and Smad3 have opposing roles in breast cancer bone metastasis by differentially affecting tumor angiogenesis

(2009) M Petersen et al.   ONCOGENE

A novel signaling pathway impact analysis

(2008) Adi Laurentiu Tarca et al.   BIOINFORMATICS

Finding friends and enemies in an enemies-only network: A graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions

(2008) Y. Qi et al.   GENOME RESEARCH

eQED: an efficient method for interpreting eQTL associations using protein networks

(2008) Silpa Suthram et al.   Molecular Systems Biology

Wnt signaling in ovarian tumorigenesis

(2007) T.A. GATCLIFFE et al.   INTERNATIONAL JOURNAL OF GYNECOLOGICAL CANCER