A Comparative Transcriptome Analysis between Wild and Albino Yellow Catfish (Pelteobagrus fulvidraco)

Characterizing the transcriptome of yellow-cheek carp (Elopichthys bambusa) enables evolutionary analyses within endemic East Asian Cyprinidae

(2014) Ming Zou et al.   GENE

Genome sequence and genetic diversity of the common carp, Cyprinus carpio

(2014) Peng Xu et al.   NATURE GENETICS

Analysis of the Skin Transcriptome in Two Oujiang Color Varieties of Common Carp

(2014) Chenghui Wang et al.   PLoS One

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

(2013) Ning Leng et al.   BIOINFORMATICS

A comparison of methods for differential expression analysis of RNA-seq data

(2013) Charlotte Soneson et al.   BMC BIOINFORMATICS

Colour variation in cichlid fish: Developmental mechanisms, selective pressures and evolutionary consequences

(2013) Martine E. Maan et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Genetics and evolution of colour patterns in reptiles

(2013) Mats Olsson et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Genetics of colouration in birds

(2013) Alexandre Roulin et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The colours of extant mammals

(2013) Tim Caro   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Adaptive colouration in amphibians

(2013) Andreas Rudh et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis

(2012) Pierre De Wit et al.   Molecular Ecology Resources

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation

(2011) Masanori Nakatani et al.   BMC EVOLUTIONARY BIOLOGY

Diversification at Transcription Factor Binding Sites within a Species and the Implications for Environmental Adaptation

(2011) R. M. Ames et al.   MOLECULAR BIOLOGY AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Integumental reddish-violet coloration owing to novel dichromatic chromatophores in the teleost fish, Pseudochromis diadema

(2011) Makoto Goda et al.   Pigment Cell & Melanoma Research

The genetic and evolutionary basis of colour variation in vertebrates

(2010) Michael Hofreiter et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

First record of albinism in the deepwater black scabbard-fishAphanopus carbo(Trichiuridae) off Madeira

(2009) J. Delgado et al.   JOURNAL OF APPLIED ICHTHYOLOGY

Pigmentary function and evolution oftyrp1gene duplicates in fish

(2009) Ingo Braasch et al.   Pigment Cell & Melanoma Research

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY