Identification of Essential Proteins Based on a New Combination of Local Interaction Density and Protein Complexes

United Complex Centrality for Identification of Essential Proteins from PPI Networks

(2017) Min Li et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

CytoNCA: A cytoscape plugin for centrality analysis and evaluation of protein interaction networks

(2015) Yu Tang et al.   BIOSYSTEMS

Identifying essential proteins from active PPI networks constructed with dynamic gene expression

(2015) Qianghua Xiao et al.   BMC GENOMICS

A Topology Potential-Based Method for Identifying Essential Proteins from PPI Networks

(2015) Min Li et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Prediction of Essential Proteins Based on Overlapping Essential Modules

(2014) Bihai Zhao et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Predicting Essential Proteins Based on Weighted Degree Centrality

(2014) Xiwei Tang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Computational Disease Gene Prioritization: An Appraisal

(2014) Nivit Gill et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Effective identification of essential proteins based on priori knowledge, network topology and gene expressions

(2014) Min Li et al.   METHODS

Controllability in protein interaction networks

(2014) S. Wuchty   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

All or Nothing: Protein Complexes Flip Essentiality between Distantly Related Eukaryotes

(2013) Colm J. Ryan et al.   Genome Biology and Evolution

A New Method for the Discovery of Essential Proteins

(2013) Xue Zhang et al.   PLoS One

Predicting the Binding Patterns of Hub Proteins: A Study Using Yeast Protein Interaction Networks

(2013) Carson M. Andorf et al.   PLoS One

Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks

(2012) Wei Peng et al.   BMC Systems Biology

A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data

(2012) Min Li et al.   BMC Systems Biology

A local average connectivity-based method for identifying essential proteins from the network level

(2011) Min Li et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Identification of Essential Proteins Based on Edge Clustering Coefficient

(2011) Jianxin Wang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Computational prediction of essential genes in an unculturable endosymbiotic bacterium, Wolbachia of Brugia malayi

(2009) Alexander G Holman et al.   BMC MICROBIOLOGY

Gene Expression Profiling and the Use of Genome-Scale In Silico Models of Escherichia coli for Analysis: Providing Context for Content

(2009) N. E. Lewis et al.   JOURNAL OF BACTERIOLOGY

Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast

(2009) Caroline C. Friedel et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A Complex-based Reconstruction of theSaccharomyces cerevisiaeInteractome

(2009) Haidong Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks

(2008) Michael Hsing et al.   BMC Systems Biology

Up-to-date catalogues of yeast protein complexes

(2008) Shuye Pu et al.   NUCLEIC ACIDS RESEARCH

DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes

(2008) R. Zhang et al.   NUCLEIC ACIDS RESEARCH

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE

Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality

(2008) Elena Zotenko et al.   PLoS Computational Biology