A Random Screen Using a Novel Reporter Assay System Reveals a Set of Sequences That Are Preferred as the TATA or TATA-Like Elements in the CYC1 Promoter of Saccharomyces cerevisiae

Looping Back to Leap Forward: Transcription Enters a New Era

(2014) Michael Levine et al.   CELL

DrosophilaTRF2 is a preferential core promoter regulator

(2014) Adi Kedmi et al.   GENES & DEVELOPMENT

TRF2, but not TBP, mediates the transcription of ribosomal protein genes

(2014) Y.-L. Wang et al.   GENES & DEVELOPMENT

Core Promoter Functions in the Regulation of Gene Expression ofDrosophilaDorsal Target Genes

(2014) Yonathan Zehavi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Enhancer–core-promoter specificity separates developmental and housekeeping gene regulation

(2014) Muhammad A. Zabidi et al.   NATURE

Simultaneous mapping of transcript ends at single-nucleotide resolution and identification of widespread promoter-associated non-coding RNA governed by TATA elements

(2014) Daechan Park et al.   NUCLEIC ACIDS RESEARCH

Chromatin and DNA sequences in defining promoters for transcription initiation

(2013) Ferenc Müller et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Massively parallel synthetic promoter assays reveal the in vivo effects of binding site variants

(2013) Ilaria Mogno et al.   GENOME RESEARCH

Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq

(2013) C. D. Arnold et al.   SCIENCE

Regulation of Amino Acid, Nucleotide, and Phosphate Metabolism in Saccharomyces cerevisiae

(2012) P. O. Ljungdahl et al.   GENETICS

Genome-wide structure and organization of eukaryotic pre-initiation complexes

(2012) Ho Sung Rhee et al.   NATURE

Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay

(2012) Alexandre Melnikov et al.   NATURE BIOTECHNOLOGY

Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters

(2012) Eilon Sharon et al.   NATURE BIOTECHNOLOGY

Massively parallel functional dissection of mammalian enhancers in vivo

(2012) Rupali P Patwardhan et al.   NATURE BIOTECHNOLOGY

Construction of a cytosolic firefly luciferase reporter cassette for use in PCR-mediated gene deletion and fusion inSaccharomyces cerevisiae

(2012) W. B. Ainsworth et al.   YEAST

Transcriptional Regulation inSaccharomyces cerevisiae: Transcription Factor Regulation and Function, Mechanisms of Initiation, and Roles of Activators and Coactivators

(2011) Steven Hahn et al.   GENETICS

Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters

(2011) D. Zeevi et al.   GENOME RESEARCH

A Conserved GA Element in TATA-Less RNA Polymerase II Promoters

(2011) Martin Seizl et al.   PLoS One

Perspectives on the RNA polymerase II core promoter

(2011) James T. Kadonaga   Wiley Interdisciplinary Reviews-Developmental Biology

The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery

(2010) T. J. Parry et al.   GENES & DEVELOPMENT

Activation of a Poised RNAPII-Dependent Promoter Requires Both SAGA and Mediator

(2010) S. K. Lee et al.   GENETICS

Highly redundant function of multiple AT-rich sequences as core promoter elements in the TATA-less RPS5 promoter of Saccharomyces cerevisiae

(2010) Fuminori Sugihara et al.   NUCLEIC ACIDS RESEARCH

Promoting developmental transcription

(2009) U. Ohler et al.   DEVELOPMENT

Comprehensive genetic analysis of transcription factor pathways using a dual reporter gene system in budding yeast

(2009) Pinay Kainth et al.   METHODS

High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis

(2009) Rupali P Patwardhan et al.   NATURE BIOTECHNOLOGY

Catalytic Core of a Membrane-Associated Eukaryotic Polyphosphate Polymerase

(2009) M. Hothorn et al.   SCIENCE

Caudal, a key developmental regulator, is a DPE-specific transcriptional factor

(2008) T. Juven-Gershon et al.   GENES & DEVELOPMENT

Analysis of combinatorial cis-regulation in synthetic and genomic promoters

(2008) Jason Gertz et al.   NATURE

Minimal components of the RNA polymerase II transcription apparatus determine the consensus TATA box

(2008) Gudrun Bjornsdottir et al.   NUCLEIC ACIDS RESEARCH

Saccharomyces cerevisiae HMO1 interacts with TFIID and participates in start site selection by RNA polymerase II

(2008) Koji Kasahara et al.   NUCLEIC ACIDS RESEARCH

ASaccharomyces cerevisiae cell-based quantitative β-galactosidase assay compatible with robotic handling and high-throughput screening

(2007) Rogerio Alves de Almeida et al.   YEAST