Differentially Expressed Gene Transcripts Using RNA Sequencing from the Blood of Immunosuppressed Kidney Allograft Recipients

Molecular Classifiers for Acute Kidney Transplant Rejection in Peripheral Blood by Whole Genome Gene Expression Profiling

(2014) S. M. Kurian et al.   AMERICAN JOURNAL OF TRANSPLANTATION

Transcriptional Profiling of Belatacept and Calcineurin Inhibitor Therapy in Renal Allograft Recipients

(2014) M. J. Vitalone et al.   AMERICAN JOURNAL OF TRANSPLANTATION

svaseq: removing batch effects and other unwanted noise from sequencing data

(2014) Jeffrey T. Leek   NUCLEIC ACIDS RESEARCH

Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells

(2014) Shanrong Zhao et al.   PLoS One

The kSORT Assay to Detect Renal Transplant Patients at High Risk for Acute Rejection: Results of the Multicenter AART Study

(2014) Silke Roedder et al.   PLOS MEDICINE

Inflammation in the setting of chronic allograft dysfunction post-kidney transplant: phenotype and genotype

(2013) Ajay K. Israni et al.   CLINICAL TRANSPLANTATION

Genomic Biomarkers Correlate with HLA-Identical Renal Transplant Tolerance

(2013) J. R. Leventhal et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Significance and Suppression of Redundant IL17 Responses in Acute Allograft Rejection by Bioinformatics Based Drug Repositioning of Fenofibrate

(2013) Silke Roedder et al.   PLoS One

Identification of Common Blood Gene Signatures for the Diagnosis of Renal and Cardiac Acute Allograft Rejection

(2013) Li Li et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

The Global Role of Kidney Transplantation

(2012) Guillermo Garcia Garcia et al.   AMERICAN JOURNAL OF NEPHROLOGY

Interpreting NK Cell Transcripts Versus T Cell Transcripts in Renal Transplant Biopsies

(2012) L. G. Hidalgo et al.   AMERICAN JOURNAL OF TRANSPLANTATION

A Peripheral Blood Diagnostic Test for Acute Rejection in Renal Transplantation

(2012) L. Li et al.   AMERICAN JOURNAL OF TRANSPLANTATION

Molecular Phenotypes of Acute Kidney Injury in Kidney Transplants

(2012) K. S. Famulski et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Cost-effectiveness analysis of renal replacement therapy in Austria

(2011) M. Haller et al.   NEPHROLOGY DIALYSIS TRANSPLANTATION

Advances of genomic science and systems biology in renal transplantation: a review

(2011) David Perkins et al.   Seminars in Immunopathology

Cost–Benefit Estimation of Cadaveric Kidney Transplantation: The Case of a Developing Country

(2011) J. Domínguez et al.   TRANSPLANTATION PROCEEDINGS

Defining the Canonical Form of T-Cell-Mediated Rejection in Human Kidney Transplants

(2010) K. S. Famulski et al.   AMERICAN JOURNAL OF TRANSPLANTATION

Cell type–specific gene expression differences in complex tissues

(2010) Shai S Shen-Orr et al.   NATURE METHODS

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Role of T cells in graft rejection and transplantation tolerance

(2009) Fadi Issa et al.   Expert Review of Clinical Immunology

The Transcriptome of Human Cytotoxic T Cells: Measuring the Burden of CTL-Associated Transcripts in Human Kidney Transplants

(2008) L. G. Hidalgo et al.   AMERICAN JOURNAL OF TRANSPLANTATION