Developmental Genetic Mechanisms of C4 Syndrome Based on Transcriptome Analysis of C3 Cotyledons and C4 Assimilating Shoots in Haloxylon ammodendron

Was low CO2 a driving force of C4 evolution: Arabidopsis responses to long-term low CO2 stress

(2014) Yuanyuan Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative Transcriptome Atlases Reveal Altered Gene Expression Modules between Two Cleomaceae C3 and C4 Plant Species

(2014) C. Kulahoglu et al.   PLANT CELL

Evolutionary Convergence of Cell-Specific Gene Expression in Independent Lineages of C4 Grasses

(2014) C. R. John et al.   PLANT PHYSIOLOGY

Deep Evolutionary Comparison of Gene Expression Identifies Parallel Recruitment of Trans-Factors in Two Independent Origins of C4 Photosynthesis

(2014) Sylvain Aubry et al.   PLoS Genetics

Genome-wide transcript analysis of early maize leaf development reveals gene cohorts associated with the differentiation of C4Kranz anatomy

(2013) Peng Wang et al.   PLANT JOURNAL

Whole transcriptome analysis using next-generation sequencing of model species Setaria viridis to support C4 photosynthesis research

(2013) Jiajia Xu et al.   PLANT MOLECULAR BIOLOGY

Photorespiration and the Evolution of C4Photosynthesis

(2012) Rowan F. Sage et al.   Annual Review of Plant Biology

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Scarecrow Plays a Role in Establishing Kranz Anatomy in Maize Leaves

(2012) Thomas L. Slewinski et al.   PLANT AND CELL PHYSIOLOGY

Individual Maize Chromosomes in the C3 Plant Oat Can Increase Bundle Sheath Cell Size and Vein Density

(2012) B. J. Tolley et al.   PLANT PHYSIOLOGY

The Development of C4 Rice: Current Progress and Future Challenges

(2012) S. von Caemmerer et al.   SCIENCE

The role of proteins in C3 plants prior to their recruitment into the C4 pathway

(2011) Sylvain Aubry et al.   JOURNAL OF EXPERIMENTAL BOTANY

The C4 plant lineages of planet Earth

(2011) R. F. Sage et al.   JOURNAL OF EXPERIMENTAL BOTANY

Evolution of C4Photosynthesis in the GenusFlaveria: How Many and Which Genes Does It Take to Make C4?

(2011) Udo Gowik et al.   PLANT CELL

Multiple Arabidopsis genes primed for recruitment into C4 photosynthesis

(2011) Kaisa Kajala et al.   PLANT JOURNAL

Independent and Parallel Recruitment of Preexisting Mechanisms Underlying C4 Photosynthesis

(2011) N. J. Brown et al.   SCIENCE

The developmental dynamics of the maize leaf transcriptome

(2010) Pinghua Li et al.   NATURE GENETICS

Structural and Metabolic Transitions of C4 Leaf Development and Differentiation Defined by Microscopy and Quantitative Proteomics in Maize

(2010) W. Majeran et al.   PLANT CELL

Evolution of C4 Photosynthesis--Looking for the Master Switch

(2010) P. Westhoff et al.   PLANT PHYSIOLOGY

An mRNA Blueprint for C4 Photosynthesis Derived from Comparative Transcriptomics of Closely Related C3 and C4 Species

(2010) A. Brautigam et al.   PLANT PHYSIOLOGY

The Origins of C4 Grasslands: Integrating Evolutionary and Ecosystem Science

(2010) E. J. Edwards et al.   SCIENCE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS

Using C4 photosynthesis to increase the yield of rice—rationale and feasibility

(2008) Julian M Hibberd et al.   CURRENT OPINION IN PLANT BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE

Oligocene CO2 Decline Promoted C4 Photosynthesis in Grasses

(2007) Pascal-Antoine Christin et al.   CURRENT BIOLOGY