Genomic Prediction of Biological Shape: Elliptic Fourier Analysis and Kernel Partial Least Squares (PLS) Regression Applied to Grain Shape Prediction in Rice (Oryza sativa L.)

Exploring the areas of applicability of whole-genome prediction methods for Asian rice (Oryza sativa L.)

(2014) Akio Onogi et al.   THEORETICAL AND APPLIED GENETICS

Genomic prediction of trait segregation in a progeny population: a case study of Japanese pear (Pyrus pyrifolia)

(2013) Hiroyoshi Iwata et al.   BMC GENETICS

Potential assessment of genome-wide association study and genomic selection in Japanese pear Pyrus pyrifolia

(2013) Hiroyoshi Iwata et al.   BREEDING SCIENCE

Three-Dimensional Seed Size and Shape QTL in Hexaploid Wheat ( L.) Populations

(2013) Keith Williams et al.   CROP SCIENCE

A Modern Ampelography: A Genetic Basis for Leaf Shape and Venation Patterning in Grape

(2013) D. H. Chitwood et al.   PLANT PHYSIOLOGY

Integrating environmental covariates and crop modeling into the genomic selection framework to predict genotype by environment interactions

(2013) Nicolas Heslot et al.   THEORETICAL AND APPLIED GENETICS

Genetic bases of rice grain shape: so many genes, so little known

(2012) Rongyu Huang et al.   TRENDS IN PLANT SCIENCE

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Evaluation of variations in the shape of grain types using principal components analysis of the elliptic Fourier descriptors

(2011) H.K. Mebatsion et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Accuracy of Genomic Selection Prediction in Barley Breeding Programs: A Simulation Study Based On the Real Single Nucleotide Polymorphism Data of Barley Breeding Lines

(2011) Hiroyoshi Iwata et al.   CROP SCIENCE

Genomic Selection in Plant Breeding: A Comparison of Models

(2011) Nicolas Heslot et al.   CROP SCIENCE

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

(2011) Xun Xu et al.   NATURE BIOTECHNOLOGY

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments

(2011) M. F. R. Resende et al.   NEW PHYTOLOGIST

Leaf shape variation and differentiation in three sympatric white oak species revealed by elliptic Fourier analysis

(2011) Vincenzo Viscosi et al.   NORDIC JOURNAL OF BOTANY

Phenomics – technologies to relieve the phenotyping bottleneck

(2011) Robert T. Furbank et al.   TRENDS IN PLANT SCIENCE

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Genetic dissection of rice grain shape using a recombinant inbred line population derived from two contrasting parents and fine mapping a pleiotropic quantitative trait locus qGL7

(2010) Xufeng Bai et al.   BMC GENETICS

Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms

(2010) Toshio Yamamoto et al.   BMC GENOMICS

Prediction of Genetic Values of Quantitative Traits in Plant Breeding Using Pedigree and Molecular Markers

(2010) J. Crossa et al.   GENETICS

Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome

(2010) Keyan Zhao et al.   PLoS One

Breeding Technologies to Increase Crop Production in a Changing World

(2010) M. Tester et al.   SCIENCE

Functional markers developed from multiple loci in GS3 for fine marker-assisted selection of grain length in rice

(2010) Chongrong Wang et al.   THEORETICAL AND APPLIED GENETICS

Genomic selection in forest tree breeding

(2010) Dario Grattapaglia et al.   Tree Genetics & Genomes

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE

Genome-wide association study of grain shape variation among Oryza sativa L. germplasms based on elliptic Fourier analysis

(2009) Hiroyoshi Iwata et al.   MOLECULAR BREEDING

Not just a grain of rice: the quest for quality

(2009) Melissa A. Fitzgerald et al.   TRENDS IN PLANT SCIENCE