Distinct Strains of Toxoplasma gondii Feature Divergent Transcriptomes Regardless of Developmental Stage

Gene Set Enrichment Analysis (GSEA) of Toxoplasma gondii expression datasets links cell cycle progression and the bradyzoite developmental program

(2014) Matthew Croken et al.   BMC GENOMICS

Toxoplasma gondii merozoite gene expression analysis with comparison to the life cycle discloses a unique expression state during enteric development

(2014) Michael S Behnke et al.   BMC GENOMICS

Toxoplasmadevelopment - turn the switch on or off?

(2014) Michael W. White et al.   CELLULAR MICROBIOLOGY

A cascade of DNA-binding proteins for sexual commitment and development in Plasmodium

(2014) Abhinav Sinha et al.   NATURE

GCN2-like eIF2α kinase manages the amino acid starvation response in Toxoplasma gondii

(2013) Christian Konrad et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

ApiAP2 transcription factor restricts development of the Toxoplasma tissue cyst

(2013) J. B. Radke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TheToxoplasmanuclear factor TgAP2XI-4 controls bradyzoite gene expression and cyst formation

(2012) Robert Walker et al.   MOLECULAR MICROBIOLOGY

Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites

(2012) Achchuthan Shanmugasundram et al.   NUCLEIC ACIDS RESEARCH

Identification of an AP2-family Protein That Is Critical for Malaria Liver Stage Development

(2012) Shiroh Iwanaga et al.   PLoS One

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Polymorphic family of injected pseudokinases is paramount in Toxoplasma virulence

(2011) M. L. Reese et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Virulence differences in Toxoplasma mediated by amplification of a family of polymorphic pseudokinases

(2011) M. S. Behnke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Monomorphic Haplotype of Chromosome Ia Is Associated with Widespread Success in Clonal and Nonclonal Populations of Toxoplasma gondii

(2011) A. Khan et al.   mBio

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Coordinated Progression through Two Subtranscriptomes Underlies the Tachyzoite Cycle of Toxoplasma gondii

(2010) Michael S. Behnke et al.   PLoS One

Genomic Data Reveal Toxoplasma gondii Differentiation Mutants Are Also Impaired with Respect to Switching into a Novel Extracellular Tachyzoite State

(2010) Pamela J. Lescault et al.   PLoS One

T. gondii RP Promoters & Knockdown Reveal Molecular Pathways Associated with Proliferation and Cell-Cycle Arrest

(2010) Samuel L. Hutson et al.   PLoS One

The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment

(2010) Stephen F. Altschul et al.   PLoS Computational Biology

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Identification of a transcription factor in the mosquito-invasive stage of malaria parasites

(2009) Masao Yuda et al.   MOLECULAR MICROBIOLOGY

Transcription factor AP2-Sp and its target genes in malarial sporozoites

(2009) Masao Yuda et al.   MOLECULAR MICROBIOLOGY

Genetic diversity of Toxoplasma gondii in animals and humans

(2009) L. D. Sibley et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Toxoplasma: the next 100years

(2008) Kami Kim et al.   MICROBES AND INFECTION

The transcription of bradyzoite genes inToxoplasma gondiiis controlled by autonomous promoter elements

(2008) Michael S. Behnke et al.   MOLECULAR MICROBIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS