Faecal Microbiota of Forage-Fed Horses in New Zealand and the Population Dynamics of Microbial Communities following Dietary Change

The core faecal bacterial microbiome of Irish Thoroughbred racehorses

(2013) M.M. O' Donnell et al.   LETTERS IN APPLIED MICROBIOLOGY

Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities

(2013) Sandra Kittelmann et al.   PLoS One

Identification of a Core Bacterial Community within the Large Intestine of the Horse

(2013) Kirsty Dougal et al.   PLoS One

An In Vitro Model of the Horse Gut Microbiome Enables Identification of Lactate-Utilizing Bacteria That Differentially Respond to Starch Induction

(2013) Amy S. Biddle et al.   PLoS One

Diversity of gut methanogens in herbivorous animals

(2012) B. St-Pierre et al.   Animal

Pyrosequencing of 16S rRNA genes in fecal samples reveals high diversity of hindgut microflora in horses and potential links to chronic laminitis

(2012) Samantha M Steelman et al.   BMC Veterinary Research

Intestinal ciliate composition found in the feces of racing horses from Izmir, Turkey

(2012) Gözde Gürelli et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

A comparison of the microbiome and the metabolome of different regions of the equine hindgut

(2012) Kirsty Dougal et al.   FEMS MICROBIOLOGY ECOLOGY

Fecal pH and Microbial Populations in Thoroughbred Horses During Transition from Pasture to Concentrate Feeding

(2012) Mariette van den Berg et al.   JOURNAL OF EQUINE VETERINARY SCIENCE

Fast, accurate error-correction of amplicon pyrosequences using Acacia

(2012) Lauren Bragg et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Comparison of the Fecal Microbiota of Healthy Horses and Horses with Colitis by High Throughput Sequencing of the V3-V5 Region of the 16S rRNA Gene

(2012) Marcio C. Costa et al.   PLoS One

Groundtruthing Next-Gen Sequencing for Microbial Ecology–Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing

(2012) Charles K. Lee et al.   PLoS One

The equine intestinal microbiome

(2012) Marcio C. Costa et al.   ANIMAL HEALTH RESEARCH REVIEWS

Intestinal ciliate composition found in the feces of the Turk rahvan horse Equus caballus, Linnaeus 1758

(2011) Gözde Gürelli et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rumen Microbial Population Dynamics during Adaptation to a High-Grain Diet

(2010) S. C. Fernando et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Changes in faecal bacteria associated with concentrate and forage-only diets fed to horses in training

(2009) B. WILLING et al.   EQUINE VETERINARY JOURNAL

The Bacterial Community of the Horse Gastrointestinal Tract and Its Relation to Fermentative Acidosis, Laminitis, Colic, and Stomach Ulcers

(2009) Rafat A.M. Al Jassim et al.   VETERINARY CLINICS OF NORTH AMERICA-EQUINE PRACTICE

Phylogenetic analysis of hindgut microbiota in Hokkaido native horses compared to light horses

(2008) Hidehisa YAMANO et al.   ANIMAL SCIENCE JOURNAL

Structure of the Archaeal Community of the Rumen

(2008) P. H. Janssen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Semi-quantitative analysis of Ruminococcus flavefaciens, Fibrobacter succinogenes and Streptococcus bovis in the equine large intestine using real-time polymerase chain reaction

(2008) Peter M. Hastie et al.   BRITISH JOURNAL OF NUTRITION

Effect of forage conservation method on microbial flora and fermentation pattern in forage and in equine colon and faeces

(2008) C.E. Müller et al.   Livestock Science

The influence of sex, handedness, and washing on the diversity of hand surface bacteria

(2008) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE