Genome-Wide Prediction Methods in Highly Diverse and Heterozygous Species: Proof-of-Concept through Simulation in Grapevine

Genetic structure in cultivated grapevines is linked to geography and human selection

(2013) Roberto Bacilieri et al.   BMC PLANT BIOLOGY

Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape

(2013) Francesco Emanuelli et al.   BMC PLANT BIOLOGY

Projected shifts of wine regions in response to climate change

(2013) M. Moriondo et al.   CLIMATIC CHANGE

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

(2013) Stéphane De Mita et al.   MOLECULAR ECOLOGY

Climate change, wine, and conservation

(2013) L. Hannah et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Will genomic selection be a practical method for plant breeding?

(2012) Akihiro Nakaya et al.   ANNALS OF BOTANY

Accuracy of Genomic Selection Methods in a Standard Data Set of Loblolly Pine (Pinus taeda L.)

(2012) M. F. R. Resende et al.   GENETICS

Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding

(2012) G. de los Campos et al.   GENETICS

Genomic Prediction in Animals and Plants: Simulation of Data, Validation, Reporting, and Benchmarking

(2012) H. D. Daetwyler et al.   GENETICS

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

(2012) Vincent Segura et al.   NATURE GENETICS

Transposable Elements Are a Major Cause of Somatic Polymorphism in Vitis vinifera L.

(2012) Grégory Carrier et al.   PLoS One

Large-scale parentage analysis in an extended set of grapevine cultivars (Vitis vinifera L.)

(2012) Thierry Lacombe et al.   THEORETICAL AND APPLIED GENETICS

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness

(2011) B Mangin et al.   HEREDITY

Genome-wide association study of leaf architecture in the maize nested association mapping population

(2011) Feng Tian et al.   NATURE GENETICS

Genetic structure and domestication history of the grape

(2011) Sean Myles et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High throughput analysis of grape genetic diversity as a tool for germplasm collection management

(2011) V. Laucou et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association mapping of agronomic and morphologic traits in highly structured populations of barley cultivars

(2011) Minghui Wang et al.   THEORETICAL AND APPLIED GENETICS

Population genetics of genomics-based crop improvement methods

(2011) Martha T. Hamblin et al.   TRENDS IN GENETICS

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

A candidate gene association study on muscat flavor in grapevine (Vitis vinifera L.)

(2010) Francesco Emanuelli et al.   BMC PLANT BIOLOGY

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Rapid Genomic Characterization of the Genus Vitis

(2010) Sean Myles et al.   PLoS One

Genomic selection in forest tree breeding

(2010) Dario Grattapaglia et al.   Tree Genetics & Genomes

Genomic-Enabled Prediction Based on Molecular Markers and Pedigree Using the Bayesian Linear Regression Package in R

(2010) Paulino Pérez et al.   Plant Genome

AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses

(2009) Surendra Kumar et al.   BMC BIOINFORMATICS

Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case Study

(2009) S. Zhong et al.   GENETICS

Reliability of Genomic Predictions Across Multiple Populations

(2009) A. P. W. de Roos et al.   GENETICS

Quantitative Genetic Bases of Anthocyanin Variation in Grape (Vitis vinifera L. ssp. sativa) Berry: A Quantitative Trait Locus to Quantitative Trait Nucleotide Integrated Study

(2009) A. Fournier-Level et al.   GENETICS

Evolution of the VvMybA gene family, the major determinant of berry colour in cultivated grapevine (Vitis vinifera L.)

(2009) A Fournier-Level et al.   HEREDITY

Genomic prediction of simulated multibreed and purebred performance using observed fifty thousand single nucleotide polymorphism genotypes1

(2009) K. Kizilkaya et al.   JOURNAL OF ANIMAL SCIENCE

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE

The Genetic Architecture of Maize Flowering Time

(2009) E. S. Buckler et al.   SCIENCE

Parentage of Merlot and related winegrape cultivars of southwestern France: discovery of the missing link

(2008) J.-M. BOURSIQUOT et al.   AUSTRALIAN JOURNAL OF GRAPE AND WINE RESEARCH

quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation

(2008) S. Neuenschwander et al.   BIOINFORMATICS

Extended Bayesian information criteria for model selection with large model spaces

(2008) J. Chen et al.   BIOMETRIKA

Genomic selection: prediction of accuracy and maximisation of long term response

(2008) Mike Goddard   GENETICA

Accuracy of Genomic Selection Using Different Methods to Define Haplotypes

(2008) M. P. L. Calus et al.   GENETICS

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

The Bayesian Lasso

(2008) Trevor Park et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Genomewide selection in oil palm: increasing selection gain per unit time and cost with small populations

(2008) C. K. Wong et al.   THEORETICAL AND APPLIED GENETICS

The impact of genetic relationship information on genome-assisted breeding values

(2007) D. Habier et al.   GENETICS