Fast and Sensitive Alignment of Microbial Whole Genome Sequencing Reads to Large Sequence Datasets on a Desktop PC: Application to Metagenomic Datasets and Pathogen Identification
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Title
Fast and Sensitive Alignment of Microbial Whole Genome Sequencing Reads to Large Sequence Datasets on a Desktop PC: Application to Metagenomic Datasets and Pathogen Identification
Authors
Keywords
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Journal
PLoS One
Volume 9, Issue 7, Pages e103441
Publisher
Public Library of Science (PLoS)
Online
2014-08-01
DOI
10.1371/journal.pone.0103441
References
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Note: Only part of the references are listed.- WGSQuikr: Fast Whole-Genome Shotgun Metagenomic Classification
- (2014) David Koslicki et al. PLoS One
- Database resources of the National Center for Biotechnology Information
- (2013) NUCLEIC ACIDS RESEARCH
- eggNOG v4.0: nested orthology inference across 3686 organisms
- (2013) Sean Powell et al. NUCLEIC ACIDS RESEARCH
- GenBank
- (2013) Dennis A. Benson et al. NUCLEIC ACIDS RESEARCH
- JBioWH: an open-source Java framework for bioinformatics data integration
- (2013) R. Vera et al. Database-The Journal of Biological Databases and Curation
- Taxonomic binning of metagenome samples generated by next-generation sequencing technologies
- (2012) J. Droge et al. BRIEFINGS IN BIOINFORMATICS
- Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective
- (2012) H. Teeling et al. BRIEFINGS IN BIOINFORMATICS
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Detecting Atypical Examples of Known Domain Types by Sequence Similarity Searching: The SBASE Domain Library Approach
- (2011) Somdutta Dhir et al. CURRENT PROTEIN & PEPTIDE SCIENCE
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- A survey of sequence alignment algorithms for next-generation sequencing
- (2010) H. Li et al. BRIEFINGS IN BIOINFORMATICS
- mrsFAST: a cache-oblivious algorithm for short-read mapping
- (2010) Faraz Hach et al. NATURE METHODS
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences
- (2009) M. Monzoorul Haque et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Methods for comparative metagenomics
- (2009) Daniel H Huson et al. BMC BIOINFORMATICS
- A Bioinformatician's Guide to Metagenomics
- (2008) V. Kunin et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
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