Characterization of the Fecal Microbiota of Pigs before and after Inoculation with “Brachyspira hampsonii”

Fecal shedding of Brachyspira spp. on a farrow-to-finish swine farm with a clinical history of "Brachyspira hampsonii"-associated colitis

(2013) Amy H Patterson et al.   BMC Veterinary Research

Obesity as a Risk Factor for Clostridium difficile Infection

(2013) J. Bishara et al.   CLINICAL INFECTIOUS DISEASES

Reproduction of Mucohaemorrhagic Diarrhea and Colitis Indistinguishable from Swine Dysentery following Experimental Inoculation with “Brachyspira hampsonii” Strain 30446

(2013) Joseph E. Rubin et al.   PLoS One

Swine Dysentery: Aetiology, Pathogenicity, Determinants of Transmission and the Fight against the Disease

(2013) Avelino Alvarez-Ordóez et al.   International Journal of Environmental Research and Public Health

mPUMA: a computational approach to microbiota analysis by de novo assembly of operational taxonomic units based on protein-coding barcode sequences

(2013) Matthew G Links et al.   Microbiome

Comparative virulence of clinical Brachyspira spp. isolates in inoculated pigs

(2012) Eric R. Burrough et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Phenotypic and molecular characterization of a novel strongly hemolytic Brachyspira species, provisionally designated “Brachyspira hampsonii”

(2012) Yogesh Chander et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

(2011) Thomas M. Gihring et al.   ENVIRONMENTAL MICROBIOLOGY

A Molecular Enrichment Strategy Based on cpn60 for Detection of Epsilon-Proteobacteria in the Dog Fecal Microbiome

(2011) Bonnie Chaban et al.   MICROBIAL ECOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Longitudinal investigation of the age-related bacterial diversity in the feces of commercial pigs

(2011) Hyeun Bum Kim et al.   VETERINARY MICROBIOLOGY

Detection and quantification of 14 Campylobacter species in pet dogs reveals an increase in species richness in feces of diarrheic animals

(2010) Bonnie Chaban et al.   BMC MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY