PANET: A GPU-Based Tool for Fast Parallel Analysis of Robustness Dynamics and Feed-Forward/Feedback Loop Structures in Large-Scale Biological Networks

A coherent feedforward loop design principle to sustain robustness of biological networks

(2013) Duc-Hau Le et al.   BIOINFORMATICS

Structural and dynamical analysis of biological networks

(2012) Cecilia Klein et al.   Briefings in Functional Genomics

The effects of feedback loops on disease comorbidity in human signaling networks

(2011) Duc-Hau Le et al.   BIOINFORMATICS

NetDS: a Cytoscape plugin to analyze the robustness of dynamics and feedforward/feedback loop structures of biological networks

(2011) Duc-Hau Le et al.   BIOINFORMATICS

Structural Discrimination of Robustness in Transcriptional Feedforward Loops for Pattern Formation

(2011) Guillermo Rodrigo et al.   PLoS One

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

A Feed-Forward Circuit Linking Wingless, Fat-Dachsous Signaling, and the Warts-Hippo Pathway to Drosophila Wing Growth

(2010) Myriam Zecca et al.   PLOS BIOLOGY

Feed-forward signaling of TNF-α and NF-κB via IKK-β pathway contributes to insulin resistance and coronary arteriolar dysfunction in type 2 diabetic mice

(2009) Jiyeon Yang et al.   AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY

Protein evolution on a human signaling network

(2009) Qinghua Cui et al.   BMC Systems Biology

The biphasic behavior of incoherent feed-forward loops in biomolecular regulatory networks

(2008) Dongsan Kim et al.   BIOESSAYS

Coherent coupling of feedback loops: a design principle of cell signaling networks

(2008) Yung-Keun Kwon et al.   BIOINFORMATICS

A feed-forward loop guarantees robust behavior in Escherichia coli carbohydrate uptake

(2008) A. Kremling et al.   BIOINFORMATICS

Quantitative analysis of robustness and fragility in biological networks based on feedback dynamics

(2008) Yung-Keun Kwon et al.   BIOINFORMATICS

Coupled Feedback Loops Form Dynamic Motifs of Cellular Networks

(2007) Jeong-Rae Kim et al.   BIOPHYSICAL JOURNAL