Dynamic Modularity of Host Protein Interaction Networks in Salmonella Typhi Infection

Bacterial control of host gene expression through RNA polymerase II

(2013) Nataliya Lutay et al.   JOURNAL OF CLINICAL INVESTIGATION

Simple Topological Features Reflect Dynamics and Modularity in Protein Interaction Networks

(2013) Yuri Pritykin et al.   PLoS Computational Biology

Integrating gene expression and protein-protein interaction network to prioritize cancer-associated genes

(2012) Chao Wu et al.   BMC BIOINFORMATICS

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

Integrating comparative expression profiling data and association of SNPs with Salmonella shedding for improved food safety and porcine disease resistance

(2011) J. J. Uthe et al.   ANIMAL GENETICS

Host response transcriptional profiling reveals extracellular components and ABC (ATP-binding cassette) transporters gene enrichment in typhoid fever-infected Nigerian children

(2011) Sok Kean Khoo et al.   BMC INFECTIOUS DISEASES

An adhesion protein of Salmonella enterica serovar Typhi is required for pathogenesis and potential target for vaccine development

(2011) S. Ghosh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In Vivo Expression of Salmonella enterica Serotype Typhi Genes in the Blood of Patients with Typhoid Fever in Bangladesh

(2011) Alaullah Sheikh et al.   PLoS Neglected Tropical Diseases

Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy

(2010) Chen-Ching Lin et al.   BMC Systems Biology

A Rapid Change in Virulence Gene Expression during the Transition from the Intestinal Lumen into Tissue Promotes Systemic Dissemination of Salmonella

(2010) Sebastian E. Winter et al.   PLoS Pathogens

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

Global Trends in Typhoid and Paratyphoid Fever

(2009) John A. Crump et al.   CLINICAL INFECTIOUS DISEASES

Four novel coeliac disease regions replicated in an association study of a Swedish–Norwegian family cohort

(2009) S S Amundsen et al.   GENES AND IMMUNITY

The TviA auxiliary protein renders theSalmonella entericaserotype Typhi RcsB regulon responsive to changes in osmolarity

(2009) Sebastian E. Winter et al.   MOLECULAR MICROBIOLOGY

Molecular networks as sensors and drivers of common human diseases

(2009) Eric E. Schadt   NATURE

Dynamic modularity in protein interaction networks predicts breast cancer outcome

(2009) Ian W Taylor et al.   NATURE BIOTECHNOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Comparative Proteomic Analysis of the PhoP Regulon in Salmonella enterica Serovar Typhi Versus Typhimurium

(2009) Richelle C. Charles et al.   PLoS One

Transcriptional response in the peripheral blood of patients infected with Salmonella enterica serovar Typhi

(2009) Lucinda J. Thompson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CO-EXPRESSION AMONG CONSTITUENTS OF A MOTIF IN THE PROTEIN–PROTEIN INTERACTION NETWORK

(2009) NITIN BHARDWAJ et al.   Journal of Bioinformatics and Computational Biology

Regulon organization of Arabidopsis

(2008) Wieslawa I Mentzen et al.   BMC PLANT BIOLOGY

Identification of dilated cardiomyopathy signature genes through gene expression and network data integration

(2008) Anyela Camargo et al.   GENOMICS

Functional meta-analysis of double connectivity in gene coexpression networks in mammals

(2008) Marie-Paule Gustin et al.   PHYSIOLOGICAL GENOMICS

Identification of genes with abnormal expression changes in acute myeloid leukemia

(2007) Derek L. Stirewalt et al.   GENES CHROMOSOMES & CANCER