A Parallel Attractor Finding Algorithm Based on Boolean Satisfiability for Genetic Regulatory Networks

Jimena: efficient computing and system state identification for genetic regulatory networks

(2013) Stefan Karl et al.   BMC BIOINFORMATICS

Aggregation Algorithm Towards Large-Scale Boolean Network Analysis

(2013) Yin Zhao et al.   IEEE TRANSACTIONS ON AUTOMATIC CONTROL

An Efficient Algorithm for Computing Attractors of Synchronous And Asynchronous Boolean Networks

(2013) Desheng Zheng et al.   PLoS One

Finding a Periodic Attractor of a Boolean Network

(2012) Tatsuya Akutsu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Chapter 5: Network Biology Approach to Complex Diseases

(2012) Dong-Yeon Cho et al.   PLoS Computational Biology

A SAT-Based Algorithm for Finding Attractors in Synchronous Boolean Networks

(2011) E. Dubrova et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Odefy -- From discrete to continuous models

(2010) Jan Krumsiek et al.   BMC BIOINFORMATICS

Interaction networks: From protein functions to drug discovery. A review

(2008) E. Chautard et al.   PATHOLOGIE BIOLOGIE

Community Structure in Directed Networks

(2008) E. A. Leicht et al.   PHYSICAL REVIEW LETTERS

Boolean Network Model Predicts Cell Cycle Sequence of Fission Yeast

(2008) Maria I. Davidich et al.   PLoS One

A survey of kernel and spectral methods for clustering

(2007) Maurizio Filippone et al.   PATTERN RECOGNITION