Autoregressive Higher-Order Hidden Markov Models: Exploiting Local Chromosomal Dependencies in the Analysis of Tumor Expression Profiles

Wnt signaling in stem and cancer stem cells

(2013) Jane D Holland et al.   CURRENT OPINION IN CELL BIOLOGY

Functional implications of genome topology

(2013) Giacomo Cavalli et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

MeDIP-HMM: genome-wide identification of distinct DNA methylation states from high-density tiling arrays

(2012) Michael Seifert et al.   BIOINFORMATICS

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

Architecture of the human regulatory network derived from ENCODE data

(2012) Mark B. Gerstein et al.   NATURE

Parsimonious Higher-Order Hidden Markov Models for Improved Array-CGH Analysis with Applications to Arabidopsis thaliana

(2012) Michael Seifert et al.   PLoS Computational Biology

Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models

(2011) Michael Seifert et al.   BIOINFORMATICS

Hallmarks of Cancer: The Next Generation

(2011) Douglas Hanahan et al.   CELL

The functional role of Notch signaling in human gliomas

(2011) M.-T. Stockhausen et al.   NEURO-ONCOLOGY

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1

(2010) Roel G.W. Verhaak et al.   CANCER CELL

The landscape of somatic copy-number alteration across human cancers

(2010) Rameen Beroukhim et al.   NATURE

ConsensusPathDB: toward a more complete picture of cell biology

(2010) Atanas Kamburov et al.   NUCLEIC ACIDS RESEARCH

The Proneural Molecular Signature Is Enriched in Oligodendrogliomas and Predicts Improved Survival among Diffuse Gliomas

(2010) Lee A. D. Cooper et al.   PLoS One

A New Data Mining Approach for the Detection of Bacterial Promoters Combining Stochastic and Combinatorial Methods

(2009) Catherine Eng et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Rembrandt: Helping Personalized Medicine Become a Reality through Integrative Translational Research

(2009) S. Madhavan et al.   MOLECULAR CANCER RESEARCH

Integrative genome-wide analysis reveals a robust genomic glioblastoma signature associated with copy number driving changes in gene expression

(2008) Marie de Tayrac et al.   GENES CHROMOSOMES & CANCER

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

(2008) Roger McLendon et al.   NATURE

Bayesian Markov switching models for the early detection of influenza epidemics

(2008) Miguel A. Martínez-Beneito et al.   STATISTICS IN MEDICINE

Extension of higher-order HMC modeling with application to image segmentation

(2007) Lamia Benyoussef et al.   DIGITAL SIGNAL PROCESSING