Analysis of Transposable Elements in the Genome of Asparagus officinalis from High Coverage Sequence Data

Young, intact and nested retrotransposons are abundant in the onion and asparagus genomes

(2013) C. Vitte et al.   ANNALS OF BOTANY

Assembly and comparative analysis of transposable elements from low coverage genomic sequence data in Asparagales

(2013) Kate L. Hertweck   GENOME

Active Transposition in Genomes

(2012) Cheng Ran Lisa Huang et al.   Annual Review of Genetics

Plant sex chromosome evolution

(2012) Deborah Charlesworth   JOURNAL OF EXPERIMENTAL BOTANY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Genome-Wide Characterization of Nonreference Transposons Reveals Evolutionary Propensities of Transposons in Soybean

(2012) Z. Tian et al.   PLANT CELL

Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data

(2012) Daniel R. Mende et al.   PLoS One

Chromatin structure changes around satellite repeats on the Schistosoma mansoni female sex chromosome suggest a possible mechanism for sex chromosome emergence

(2012) Julie MJ Lepesant et al.   GENOME BIOLOGY

Sex Chromosomes in Land Plants

(2011) Ray Ming et al.   Annual Review of Plant Biology

Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians

(2011) Maud I. Tenaillon et al.   Genome Biology and Evolution

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

The genome of the extremophile crucifer Thellungiella parvula

(2011) Maheshi Dassanayake et al.   NATURE GENETICS

Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia

(2011) Jiří Macas et al.   PLoS One

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing

(2010) Eva Hřibová et al.   BMC PLANT BIOLOGY

The genome of Theobroma cacao

(2010) Xavier Argout et al.   NATURE GENETICS

Limitations of next-generation genome sequence assembly

(2010) Can Alkan et al.   NATURE METHODS

Bos taurus genome assembly

(2009) Yue Liu et al.   BMC GENOMICS

Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes

(2008) Tomas Cermak et al.   CHROMOSOME RESEARCH

The evolution of restricted recombination in sex chromosomes

(2008) Roberta Bergero et al.   TRENDS IN ECOLOGY & EVOLUTION

The impact of next-generation sequencing technology on genetics

(2008) Elaine R. Mardis   TRENDS IN GENETICS