GASOLINE: a Greedy And Stochastic algorithm for Optimal Local multiple alignment of Interaction NEtworks

A subgraph isomorphism algorithm and its application to biochemical data

(2013) Vincenzo Bonnici et al.   BMC BIOINFORMATICS

SMETANA: Accurate and Scalable Algorithm for Probabilistic Alignment of Large-Scale Biological Networks

(2013) Sayed Mohammad Ebrahim Sahraeian et al.   PLoS One

GRAPES: A Software for Parallel Searching on Biological Graphs Targeting Multi-Core Architectures

(2013) Rosalba Giugno et al.   PLoS One

A Census of Human Soluble Protein Complexes

(2012) Pierre C. Havugimana et al.   CELL

A Network Synthesis Model for Generating Protein Interaction Network Families

(2012) Sayed Mohammad Ebrahim Sahraeian et al.   PLoS One

Pathway Commons, a web resource for biological pathway data

(2010) E. G. Cerami et al.   NUCLEIC ACIDS RESEARCH

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

bioDBnet: the biological database network

(2009) Uma Mudunuri et al.   BIOINFORMATICS

IsoRankN: spectral methods for global alignment of multiple protein networks

(2009) C.-S. Liao et al.   BIOINFORMATICS

Querying Pathways in Protein Interaction Networks Based on Hidden Markov Models

(2009) Xiaoning Qian et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast and Accurate Alignment of Multiple Protein Networks

(2009) Maxim Kalaev et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

MINT, the molecular interaction database: 2009 update

(2009) Arnaud Ceol et al.   NUCLEIC ACIDS RESEARCH

Effective Identification of Conserved Pathways in Biological Networks Using Hidden Markov Models

(2009) Xiaoning Qian et al.   PLoS One

Global alignment of multiple protein interaction networks with application to functional orthology detection

(2008) R. Singh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence

(2008) Wan Kyu Kim et al.   PLoS Computational Biology

NetGrep: fast network schema searches in interactomes

(2008) Eric Banks et al.   GENOME BIOLOGY