4.6 Article

Continuous Morphological Variation Correlated with Genome Size Indicates Frequent Introgressive Hybridization among Diphasiastrum Species (Lycopodiaceae) in Central Europe

Journal

PLOS ONE
Volume 9, Issue 6, Pages -

Publisher

PUBLIC LIBRARY SCIENCE
DOI: 10.1371/journal.pone.0099552

Keywords

-

Funding

  1. Grant Agency of Charles University [GAUK 90809]
  2. Academy of Science of the Czech Republic [RVO 67985939]
  3. Czech Science Foundation (Centre of Excellence PLADIAS) [14-36079G]

Ask authors/readers for more resources

Introgressive hybridization is an important evolutionary process frequently contributing to diversification and speciation of angiosperms. Its extent in other groups of land plants has only rarely been studied, however. We therefore examined the levels of introgression in the genus Diphasiastrum, a taxonomically challenging group of Lycopodiophytes, using flow cytometry and numerical and geometric morphometric analyses. Patterns of morphological and cytological variation were evaluated in an extensive dataset of 561 individuals from 57 populations of six taxa from Central Europe, the region with the largest known taxonomic complexity. In addition, genome size values of 63 individuals from Northern Europe were acquired for comparative purposes. Within Central European populations, we detected a continuous pattern in both morphological variation and genome size (strongly correlated together) suggesting extensive levels of interspecific gene flow within this region, including several large hybrid swarm populations. The secondary character of habitats of Central European hybrid swarm populations suggests that man-made landscape changes might have enhanced unnatural contact of species, resulting in extensive hybridization within this area. On the contrary, a distinct pattern of genome size variation among individuals from other parts of Europe indicates that pure populations prevail outside Central Europe. All in all, introgressive hybridization among Diphasiastrum species in Central Europe represents a unique case of extensive interspecific gene flow among spore producing vascular plants that cause serious complications of taxa delimitation.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.6
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biochemistry & Molecular Biology

Novelty and Convergence in Adaptation to Whole Genome Duplication

Magdalena Bohutinska, Mark Alston, Patrick Monnahan, Terezie Mandakova, Sian Bray, Pirita Paajanen, Filip Kolar, Levi Yant

Summary: Two plant species exhibit different genomic responses to whole genome duplication, suggesting the presence of multiple evolutionary trajectories when adapting to the challenges of whole genome duplication.

MOLECULAR BIOLOGY AND EVOLUTION (2021)

Review Biochemical Research Methods

Plant material selection, collection, preservation, and storage for nuclear DNA content estimation

Martin Certner, Magdalena Lucanova, Elwira Sliwinska, Filip Kolar, Joao Loureiro

Summary: In theory, any plant tissue with intact nuclei can be used for estimating nuclear DNA content using flow cytometry (FCM), but tissue selection and quality can impact measurement accuracy. Based on research goals, choosing appropriate tissue is crucial for accurate estimates, following best practices guidelines.

CYTOMETRY PART A (2022)

Article Plant Sciences

Afro-alpine flagships revisited II: elucidating the evolutionary relationships and species boundaries in the giant senecios (Dendrosenecio, Asteraceae)

Abel Gizaw, Juan Manuel Gorospe, Martha Kandziora, Desalegn Chala, Lovisa Gustafsson, Abush Zinaw, Luciana Salomon, Gerald Eilu, Christian Brochmann, Filip Kolar, Roswitha Schmickl

Summary: Research has found that the species diversity in Dendrosenecio genus began between the Late Miocene and the Pleistocene, when high elevation habitats first emerged in East Africa. Analysis identified four major clades corresponding to geographically distant mountain groups. Species delimitation analysis supported 10 species, with only five receiving full support.

ALPINE BOTANY (2022)

Article Plant Sciences

Ploidy and local environment drive intraspecific variation in endoreduplication in Arabidopsis arenosa

Guillaume Wos, Lenka Mackova, Katerina Kubikova, Filip Kolar

Summary: This study investigates the intraspecific variation in endoreduplication and reveals that it is mainly influenced by the original ploidy level of the populations, with diploids showing significantly higher endoreduplication. The effect of elevation on endoreduplication level is also observed, but shows regional-specific patterns. Transcriptomic analysis suggests that differentially expressed genes related to stress and hormone response, as well as modifications in the cell wall and chloroplasts, are involved in the endoreduplication process.

AMERICAN JOURNAL OF BOTANY (2022)

Article Biochemistry & Molecular Biology

Genomic Signatures of Sexual Selection on Pollen-Expressed Genes in Arabis alpina

Juanita Gutierrez-Valencia, Marco Fracassetti, Robert Horvath, Benjamin Laenen, Aurelie Desamore, Andreas D. Drouzas, Magne Friberg, Filip Kolar, Tanja Slotte

Summary: The study found that intra-sexual competition shapes the evolution of pollen-expressed genes, with the intensity of sexual selection decreasing as self-fertilization rates increase.

MOLECULAR BIOLOGY AND EVOLUTION (2022)

Article Plant Sciences

Center of origin and evolutionary history in the high Andean genus Oritrophium (Astereae, Asteraceae)

Luciana Salomon, Marcela Nicola, Martha Kandziora, Filip Kolar, Petr Sklenar

Summary: This study explored the evolutionary history of Oritrophium, a genus endemic to alpine habitats in North and South America, revealing its polyphyletic origin in the Early Pliocene in the Andes. The genus likely diversified with the emergence of the Paramo during the Late Pliocene and dispersed mainly from South-to-North in the Pleistocene. Oritrophium s.s. represents the first record of a long-distance dispersal from the Paramo of South America to North America. The dispersal pattern within South America was mirrored by the intraspecific population diversity and structure of the investigated species.

ALPINE BOTANY (2022)

Article Forestry

Distribution, hybridisation and morphological variation in Alnus rohlenae (Betulaceae) an endemic species of the Balkan Peninsula

Jan Smid, Petr Vit, Jan Douda, Karol Krak, Bohumil Mandak

Summary: The tetraploid species A. rohlenae has replaced the diploid species in the western Balkan Peninsula and forms a contact zone with diploid populations. Tetraploids are primarily located in mountainous areas and are gradually replaced by diploids towards lowlands.

EUROPEAN JOURNAL OF FOREST RESEARCH (2022)

Article Ecology

Genomic basis and phenotypic manifestation of (non-)parallel serpentine adaptation in Arabidopsis arenosa

Veronika Konecna, Marek Sustr, Doubravka Pozarova, Martin Certner, Anna Krejcova, Edita Tylova, Filip Kolar

Summary: Parallel evolution is a common phenomenon in nature that showcases rapid environmental adaptation. In this study, researchers investigated the genomic and phenotypic parallelism in Arabidopsis arenosa populations adapted to toxic serpentine soils. They found evidence of phenotypic parallelism in functional traits, with varying fitness differences congruent to neutral genetic differentiation. There was also significant genomic parallelism at the gene level, suggesting that similar phenotypes may arise from selection on different loci in similar functional pathways. The study highlights the importance of genetic redundancy in rapid adaptation involving traits with polygenic architecture.

EVOLUTION (2022)

Article Plant Sciences

Parallel local adaptation to an alpine environment in Arabidopsis arenosa

Guillaume Wos, Erwann Arc, Karl Huelber, Veronika Konecna, Adam Knotek, Doubravka Pozarova, Clara Bertel, Dominik Kaplenig, Terezie Mandakova, Gilbert Neuner, Peter Schoenswetter, Ilse Kranner, Filip Kolar

Summary: Parallel local adaptation, when different genetic lineages independently adapt to the same selective environment, was investigated in Arabidopsis arenosa populations from four distinct mountain regions. The study found that the populations exhibited similar adaptive responses to elevation difference, indicating parallel local adaptation. The results highlight the role of divergent selection and provide experimental support for the repeatability of adaptive evolution.

JOURNAL OF ECOLOGY (2022)

Article Ecology

Polyploidization as an opportunistic mutation: The role of unreduced gametes formation and genetic drift in polyploid establishment

Josselin Clo, Nelida Padilla-Garcia, Filip Kolar

Summary: It is widely believed that successful polyploidy reflects an increased fitness due to whole-genome duplication (WGD), but there are also costs and frequency-dependent selection in neo-polyploid lineages. The idea that polyploidy can be fixed by genetic drift is underexplored in the literature. By building a theoretical model, the researchers found that polyploidy can only fix in a population by chance when genetic drift is stronger than natural selection, even if polyploidy confers a selective advantage.

JOURNAL OF EVOLUTIONARY BIOLOGY (2022)

Article Plant Sciences

Repeated colonization of alpine habitats by Arabidopsis arenosa viewed through freezing resistance and ice management strategies

D. Kaplenig, C. Bertel, E. Arc, R. Villscheider, M. Ralser, F. Kolar, G. Wos, K. Huelber, I Kranner, G. Neuner

Summary: The success or failure of plants in coping with freezing temperatures is crucial for their distribution and adaptation in new habitats. This study focused on the differentiation in freezing resistance, cold acclimation potential, and ice management strategies in alpine and foothill populations of Arabidopsis arenosa, revealing the importance of dynamic adjustment and evolutionary history in plant adaptation to alpine environments. The formation of an extracellular ice lens as a mechanism to avoid tissue damage during freezing is a novel finding with potential implications for plant survival in extreme cold conditions.

PLANT BIOLOGY (2022)

Article Ecology

The importance of considering the evolutionary history of polyploids when assessing climatic niche evolution

Nelida Padilla-Garcia, Gabriela Sramkova, Eliska Zaveska, Marek Slenker, Josselin Clo, Vojtech Zeisek, Magdalena Lucanova, Ieva Rurane, Filip Kolar, Karol Marhold

Summary: This study investigates the impact of evolutionary processes on niche differentiation of autopolyploids in Arabidopsis arenosa. Through cytotyping and considering the evolutionary history, the study reveals that the niche shift of tetraploids is not driven by whole-genome duplication per se, but rather reflects dynamic post-WGD evolution, including migration and introgression with other diploid lineages. These findings highlight the importance of evolutionary processes following WGD in the adaptation of polyploids to challenging environments.

JOURNAL OF BIOGEOGRAPHY (2023)

Article Plant Sciences

Parallel Differentiation and Plastic Adjustment of Leaf Anatomy in Alpine Arabidopsis arenosa Ecotypes

Clara Bertel, Dominik Kaplenig, Maria Ralser, Erwann Arc, Filip Kolar, Guillaume Wos, Karl Huelber, Andreas Holzinger, Ilse Kranner, Gilbert Neuner

Summary: The study investigated the leaf traits of alpine and foothill ecotypes of Arabidopsis arenosa and found significant differences in many traits, which may be plastic adjustments to the local environment rather than geographical origins.

PLANTS-BASEL (2022)

Article Biology

Inbreeding depression in polyploid species: a meta-analysis

Josselin Clo, Filip Kolar

Summary: Through a meta-analysis within angiosperm species, it was found that the effects of polyploidy on inbreeding depression are complex and depend on the time since polyploidization. Young polyploid lineages have less inbreeding depression, while natural polyploid lineages are intermediate and have more inbreeding depression compared to synthetic neopolyploids.

BIOLOGY LETTERS (2022)

Article Plant Sciences

How to Tackle Phylogenetic Discordance in Recent and Rapidly Radiating Groups? Developing a Workflow Using Loricaria (Asteraceae) as an Example

Martha Kandziora, Petr Sklenar, Filip Kolar, Roswitha Schmickl

Summary: A major challenge in phylogenetics and genomics is to resolve young rapidly radiating groups. This study focuses on the high-Andean Asteraceae genus Loricaria to shed light on the potential sources of phylogenetic discordance. By analyzing hundreds of nuclear loci and plastome phylogeny, the study provides strong evidence for incomplete lineage sorting (ILS) and hybridization within the genus Loricaria, which may have been promoted during Pleistocene glaciations.

FRONTIERS IN PLANT SCIENCE (2022)

No Data Available