Abundance and Diversity of Ammonia-Oxidizing Archaea and Bacteria in Sediments of Trophic End Members of the Laurentian Great Lakes, Erie and Superior

Spatial Distribution and Factors Shaping the Niche Segregation of Ammonia-Oxidizing Microorganisms in the Qiantang River, China

(2013) Shuai Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Enrichment and Genome Sequence of the Group I.1a Ammonia-Oxidizing Archaeon “Ca. Nitrosotenuis uzonensis” Representing a Clade Globally Distributed in Thermal Habitats

(2013) Elena V. Lebedeva et al.   PLoS One

Temporal and Spatial Coexistence of Archaeal and BacterialamoAGenes and Gene Transcripts in Lake Lucerne

(2013) Elisabeth W. Vissers et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Physiology and Diversity of Ammonia-Oxidizing Archaea

(2012) David A. Stahl et al.   Annual Review of Microbiology

Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea

(2012) Roland Hatzenpichler   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ecophysiological Characterization of Ammonia-Oxidizing Archaea and Bacteria from Freshwater

(2012) Elizabeth French et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Impact of different bioenergy crops on N-cycling bacterial and archaeal communities in soil

(2012) Yuejian Mao et al.   ENVIRONMENTAL MICROBIOLOGY

Predominance of thaumarchaeal ammonia oxidizer abundance and transcriptional activity in an acidic fen

(2012) Martina Herrmann et al.   ENVIRONMENTAL MICROBIOLOGY

Low-ammonia niche of ammonia-oxidizing archaea in rotating biological contactors of a municipal wastewater treatment plant

(2012) Laura A. Sauder et al.   ENVIRONMENTAL MICROBIOLOGY

Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil

(2012) Jong-Geol Kim et al.   ENVIRONMENTAL MICROBIOLOGY

Partitioning ofThaumarchaeotapopulations along environmental gradients in high mountain lakes

(2012) Jean-Christophe Auguet et al.   FEMS MICROBIOLOGY ECOLOGY

Seasonal and vertical distribution of putative ammonia-oxidizing thaumarchaeotal communities in an oligotrophic lake

(2012) Elisabeth W. Vissers et al.   FEMS MICROBIOLOGY ECOLOGY

Vertical segregation and phylogenetic characterization of ammonia-oxidizing Archaea in a deep oligotrophic lake

(2012) Jean-Christophe Auguet et al.   ISME Journal

Long-term trends of Great Lakes major ion chemistry

(2012) Steven C. Chapra et al.   JOURNAL OF GREAT LAKES RESEARCH

Rates and controls of nitrification in a large oligotrophic lake

(2012) Gaston E. Small et al.   LIMNOLOGY AND OCEANOGRAPHY

Ecophysiology of an Ammonia-Oxidizing Archaeon Adapted to Low-Salinity Habitats

(2012) Annika C. Mosier et al.   MICROBIAL ECOLOGY

Seasonal Changes of Freshwater Ammonia-Oxidizing Archaeal Assemblages and Nitrogen Species in Oligotrophic Alpine Lakes

(2011) Jean-Christophe Auguet et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ammonium Availability Affects the Ratio of Ammonia-Oxidizing Bacteria to Ammonia-Oxidizing Archaea in Simulated Creek Ecosystems

(2011) Martina Herrmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Potential ofpmoAAmplicon Pyrosequencing for Methanotroph Diversity Studies

(2011) Claudia Lüke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Enrichment and Characterization of an Autotrophic Ammonia-Oxidizing Archaeon of Mesophilic Crenarchaeal Group I.1a from an Agricultural Soil

(2011) Man-Young Jung et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

(2011) Michael Pester et al.   CURRENT OPINION IN MICROBIOLOGY

amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions

(2011) Michael Pester et al.   ENVIRONMENTAL MICROBIOLOGY

Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms

(2011) Daniel T Verhamme et al.   ISME Journal

Biofilm recovery in a wastewater treatment plant-influenced stream and spatial segregation of ammonia-oxidizing microbial populations

(2011) Stephanie N. Merbt et al.   LIMNOLOGY AND OCEANOGRAPHY

Changes in N-Transforming Archaea and Bacteria in Soil during the Establishment of Bioenergy Crops

(2011) Yuejian Mao et al.   PLoS One

Aquarium Nitrification Revisited: Thaumarchaeota Are the Dominant Ammonia Oxidizers in Freshwater Aquarium Biofilters

(2011) Laura A. Sauder et al.   PLoS One

Ammonia oxidation coupled to CO2 fixation by archaea and bacteria in an agricultural soil

(2011) J. Pratscher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil

(2011) L. E. Lehtovirta-Morley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers

(2011) M. Mussmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil

(2011) M. Tourna et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Niche specialization of terrestrial archaeal ammonia oxidizers

(2011) C. Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Responses of Ammonia-Oxidizing Bacterial and Archaeal Populations to Organic Nitrogen Amendments in Low-Nutrient Groundwater

(2010) D. W. Reed et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Vertical Distribution of Ammonia-Oxidizing Crenarchaeota and Methanogens in the Epipelagic Waters of Lake Kivu (Rwanda-Democratic Republic of the Congo)

(2010) M. Lliros et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cultivation of Autotrophic Ammonia-Oxidizing Archaea from Marine Sediments in Coculture with Sulfur-Oxidizing Bacteria

(2010) B.-J. Park et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Archaea rather than bacteria control nitrification in two agricultural acidic soils

(2010) Cécile Gubry-Rangin et al.   FEMS MICROBIOLOGY ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota

(2010) Anja Spang et al.   TRENDS IN MICROBIOLOGY

Effect of Lake Trophic Status and Rooted Macrophytes on Community Composition and Abundance of Ammonia-Oxidizing Prokaryotes in Freshwater Sediments

(2009) M. Herrmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Abundance of Ammonia-Oxidizing Archaea and Bacteria along an Estuarine Salinity Gradient in Relation to Potential Nitrification Rates

(2009) A. E. Bernhard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ammonia-Oxidizing Bacteria and Archaea in Groundwater Treatment and Drinking Water Distribution Systems

(2009) P. W. J. J. van der Wielen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity of Archaea and detection of crenarchaeotal amoA genes in the rivers Rhine and Têt

(2009) L Herfort et al.   AQUATIC MICROBIAL ECOLOGY

Temporal variability in the abundance of ammonia- oxidizing bacteria vs. archaea in sandy sediments of the Douro River estuary, Portugal

(2009) CM Magalhães et al.   AQUATIC MICROBIAL ECOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

The vertical distribution of bacterial and archaeal communities in the water and sediment of Lake Taihu

(2009) Wenjin Ye et al.   FEMS MICROBIOLOGY ECOLOGY

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

(2009) Willm Martens-Habbena et al.   NATURE

Diversity and abundance of ammonia-oxidizing bacteria in eutrophic and oligotrophic basins of a shallow Chinese lake (Lake Donghu)

(2009) Guo-Yuan Chen et al.   RESEARCH IN MICROBIOLOGY

Archaea Dominate the Ammonia-Oxidizing Community in the Rhizosphere of the Freshwater Macrophyte Littorella uniflora

(2008) M. Herrmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Epiphyton as a Niche for Ammonia-Oxidizing Bacteria: Detailed Comparison with Benthic and Pelagic Compartments in Shallow Freshwater Lakes

(2008) M. Coci et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary

(2008) Annika C. Mosier et al.   ENVIRONMENTAL MICROBIOLOGY

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

(2008) Graeme W. Nicol et al.   ENVIRONMENTAL MICROBIOLOGY

Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms

(2008) Maria Tourna et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California

(2008) J Michael Beman et al.   ISME Journal

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

(2008) Céline Brochier-Armanet et al.   NATURE REVIEWS MICROBIOLOGY

Determination of N-species in soil extracts using microplate techniques

(2007) Charles A. Shand et al.   TALANTA