Certain Adenylated Non-Coding RNAs, Including 5′ Leader Sequences of Primary MicroRNA Transcripts, Accumulate in Mouse Cells following Depletion of the RNA Helicase MTR4

Distinct polyadenylation landscapes of diverse human tissues revealed by a modified PA-seq strategy

(2013) Ting Ni et al.   BMC GENOMICS

Structure-based whole-genome realignment reveals many novel noncoding RNAs

(2013) S. Will et al.   GENOME RESEARCH

Non-Coding RNAs: Functional Aspects and Diagnostic Utility in Oncology

(2013) Taiho Kim et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Noncoding RNA and Polycomb recruitment

(2013) N. Brockdorff   RNA

The Human Nuclear Poly(A)-Binding Protein Promotes RNA Hyperadenylation and Decay

(2013) Stefan M. Bresson et al.   PLoS Genetics

Comparison of the yeast and human nuclear exosome complexes

(2012) Katherine E. Sloan et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Identification of RNA polymerase III-transcribed genes in eukaryotic genomes

(2012) Giorgio Dieci et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Decoding the non-coding RNAs in Alzheimer’s disease

(2012) Nicole Schonrock et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Long Noncoding RNAs in Cardiac Development and Pathophysiology

(2012) Nicole Schonrock et al.   CIRCULATION RESEARCH

RNA Degradation in Saccharomyces cerevisae

(2012) Roy Parker   GENETICS

Non-coding RNAs in Alzheimer's Disease

(2012) Lin Tan et al.   MOLECULAR NEUROBIOLOGY

Air2p is critical for the assembly and RNA-binding of the TRAMP complex and the KOW domain of Mtr4p is crucial for exosome activation

(2012) Peter Holub et al.   NUCLEIC ACIDS RESEARCH

Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs

(2012) V. A. Moran et al.   NUCLEIC ACIDS RESEARCH

Nuclear noncoding RNA surveillance: is the end in sight?

(2012) Sandra L. Wolin et al.   TRENDS IN GENETICS

Polyadenylation-Dependent Control of Long Noncoding RNA Expression by the Poly(A)-Binding Protein Nuclear 1

(2012) Yves B. Beaulieu et al.   PLoS Genetics

Emerging roles of RNA and RNA-binding protein network in cancer cells

(2011) Mee-Young Kim et al.   BMB Reports

The RNA Helicase Mtr4p Modulates Polyadenylation in the TRAMP Complex

(2011) Huijue Jia et al.   CELL

The role of the precursor structure in the biogenesis of microRNA

(2011) Julia Starega-Roslan et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

MicroRNA networks surrounding APP and amyloid-β metabolism — Implications for Alzheimer's disease

(2011) Nicole Schonrock et al.   EXPERIMENTAL NEUROLOGY

Alteration of microRNA expression in the process of mouse brain growth

(2011) Akiko Eda et al.   GENE

Air1 Zinc Knuckles 4 and 5 and a Conserved IWRXY Motif Are Critical for the Function and Integrity of the Trf4/5-Air1/2-Mtr4 Polyadenylation (TRAMP) RNA Quality Control Complex

(2011) Milo B. Fasken et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mechanisms and Consequences of Alternative Polyadenylation

(2011) Dafne Campigli Di Giammartino et al.   MOLECULAR CELL

Interaction Profiling Identifies the Human Nuclear Exosome Targeting Complex

(2011) Michal Lubas et al.   MOLECULAR CELL

Ribosomal RNA processing in Candida albicans

(2011) M. L. Pendrak et al.   RNA

PAPD5, a noncanonical poly(A) polymerase with an unusual RNA-binding motif

(2011) C. Rammelt et al.   RNA

LIN28 alters cell fate succession and acts independently of the let-7 microRNA during neurogliogenesis in vitro

(2010) E. Balzer et al.   DEVELOPMENT

Polyadenylation and degradation of incomplete RNA polymerase I transcripts in mammalian cells

(2010) Natalia Shcherbik et al.   EMBO REPORTS

Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

(2010) H. R. Chiang et al.   GENES & DEVELOPMENT

Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged

(2010) C. J. David et al.   GENES & DEVELOPMENT

MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing

(2010) Hyo Won Ahn et al.   MOLECULAR HUMAN REPRODUCTION

A paired-end sequencing strategy to map the complex landscape of transcription initiation

(2010) Ting Ni et al.   NATURE METHODS

Dicer1 and miR-219 Are Required for Normal Oligodendrocyte Differentiation and Myelination

(2010) Jason C. Dugas et al.   NEURON

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Ablation of Dicer from Murine Schwann Cells Increases Their Proliferation while Blocking Myelination

(2010) Juliane Bremer et al.   PLoS One

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Systematic gene regulation involving miRNAs during neuronal differentiation of mouse P19 embryonic carcinoma cell

(2009) Akiko Eda et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Nuclear RNA surveillance: no sign of substrates tailing off

(2009) James T. Anderson et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes

(2009) B. J. Blencowe et al.   GENES & DEVELOPMENT

The Exosome Associates Cotranscriptionally with the Nascent Pre-mRNP through Interactions with Heterogeneous Nuclear Ribonucleoproteins

(2009) Viktoria Hessle et al.   MOLECULAR BIOLOGY OF THE CELL

The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome

(2009) Claudia Schneider et al.   NUCLEIC ACIDS RESEARCH

Exosome-mediated quality control: Substrate recruitment and molecular activity

(2008) A LEBRETON et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The nuclear RNA surveillance machinery: The link between ncRNAs and genome structure in budding yeast?

(2008) Jonathan Houseley et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

F-Seq: a feature density estimator for high-throughput sequence tags

(2008) A. P. Boyle et al.   BIOINFORMATICS

U3 snoRNA promoter reflects the RNA’s function in ribosome biogenesis

(2008) Sadeq Nabavi et al.   CURRENT GENETICS

MicroRNA Expression Profile in Murine Central Nervous System Development

(2008) Danyella B. Dogini et al.   JOURNAL OF MOLECULAR NEUROSCIENCE

Identification and characterization of nuclear non-canonical poly(A) polymerases from Trypanosoma brucei

(2008) Ronald D. Etheridge et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Endonucleolytic RNA cleavage by a eukaryotic exosome

(2008) Alice Lebreton et al.   NATURE

Exonucleolysis is required for nuclear mRNA quality control in yeast THO mutants

(2008) J. Assenholt et al.   RNA

The 5' external transcribed spacer in mouse ribosomal RNA contains two cleavage sites

(2008) T. Kent et al.   RNA