LABEL: Fast and Accurate Lineage Assignment with Assessment of H5N1 and H9N2 Influenza A Hemagglutinins

Influenza Research Database: an integrated bioinformatics resource for influenza research and surveillance

(2012) R. Burke Squires et al.   Influenza and Other Respiratory Viruses

Exploiting mid-range DNA patterns for sequence classification: binary abstraction Markov models

(2012) Samuel S. Shepard et al.   NUCLEIC ACIDS RESEARCH

Evolution of highly pathogenic avian influenza (H5N1) virus populations in Vietnam between 2007 and 2010

(2012) Tung Nguyen et al.   VIROLOGY

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

Classifying short genomic fragments from novel lineages using composition and homology

(2011) Donovan H Parks et al.   BMC BIOINFORMATICS

Continued evolution of highly pathogenic avian influenza A (H5N1): updated nomenclature

(2011)   Influenza and Other Respiratory Viruses

Phylogeography and Evolutionary History of Reassortant H9N2 Viruses with Potential Human Health Implications

(2011) A. Fusaro et al.   JOURNAL OF VIROLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Long-term evolution and transmission dynamics of swine influenza A virus

(2011) Dhanasekaran Vijaykrishna et al.   NATURE

Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood

(2011) Simon A. Berger et al.   SYSTEMATIC BIOLOGY

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Using genomic signatures for HIV-1 sub-typing

(2010) Aridaman Pandit et al.   BMC BIOINFORMATICS

Evolution of highly pathogenic avian H5N1 influenza viruses and the emergence of dominant variants

(2010) G. Neumann et al.   JOURNAL OF GENERAL VIROLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Active reassortment of H9 influenza viruses between wild birds and live-poultry markets in Korea

(2009) Ho Jin Moon et al.   ARCHIVES OF VIROLOGY

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

mGene: Accurate SVM-based gene finding with an application to nematode genomes

(2009) G. Schweikert et al.   GENOME RESEARCH

Continuing progress towards a unified nomenclature for the highly pathogenic H5N1 avian influenza viruses: divergence of clade 2·2 viruses

(2009) WHO/OIE/FAO HN Evolution Working Gr   Influenza and Other Respiratory Viruses

Genetic Evolution of H9 Subtype Influenza Viruses from Live Poultry Markets in Shanghai, China

(2009) F.-F. Ge et al.   JOURNAL OF CLINICAL MICROBIOLOGY

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

(2009) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

The Global Circulation of Seasonal Influenza A (H3N2) Viruses

(2008) C. A. Russell et al.   SCIENCE

Support Vector Machines and Kernels for Computational Biology

(2008) Asa Ben-Hur et al.   PLoS Computational Biology