Evolution and Structural Organization of the C Proteins of Paramyxovirinae

An anti-interferon activity shared by paramyxovirus C proteins: Inhibition of Toll-like receptor 7/9-dependent alpha interferon induction

(2013) Mayu Yamaguchi et al.   FEBS LETTERS

Different functions of the common P/V/W and V-specific domains of rinderpest virus V protein in blocking IFN signalling

(2013) S. K. Chinnakannan et al.   JOURNAL OF GENERAL VIROLOGY

Measles Virus Nonstructural C Protein Modulates Viral RNA Polymerase Activity by Interacting with Host Protein SHCBP1

(2013) M. Ito et al.   JOURNAL OF VIROLOGY

Sendai Virus C Proteins Regulate Viral Genome and Antigenome Synthesis To Dictate the Negative Genome Polarity

(2013) T. Irie et al.   JOURNAL OF VIROLOGY

Powerful Sequence Similarity Search Methods and In-Depth Manual Analyses Can Identify Remote Homologs in Many Apparently "Orphan" Viral Proteins

(2013) D. B. Kuchibhatla et al.   JOURNAL OF VIROLOGY

The Effect of Gene Overlapping on the Rate of RNA Virus Evolution

(2013) Etienne Simon-Loriere et al.   MOLECULAR BIOLOGY AND EVOLUTION

Morbillivirus V Proteins Exhibit Multiple Mechanisms to Block Type 1 and Type 2 Interferon Signalling Pathways

(2013) Senthil K. Chinnakannan et al.   PLoS One

Improved Detection of Remote Homologues Using Cascade PSI-BLAST: Influence of Neighbouring Protein Families on Sequence Coverage

(2013) Swati Kaushik et al.   PLoS One

Computational Evolutionary Analysis of the Overlapped Surface (S) and Polymerase (P) Region in Hepatitis B Virus Indicates the Spacer Domain in P Is Crucial for Survival

(2013) Ping Chen et al.   PLoS One

An Experimental and Computational Evolution-Based Method to Study a Mode of Co-evolution of Overlapping Open Reading Frames in the AAV2 Viral Genome

(2013) Yasuhiro Kawano et al.   PLoS One

Clustered Basic Amino Acids of the Small Sendai Virus C Protein Y1 Are Critical to Its Ran GTPase-Mediated Nuclear Localization

(2013) Takashi Irie et al.   PLoS One

Identification of an overprinting gene in Merkel cell polyomavirus provides evolutionary insight into the birth of viral genes

(2013) J. J. Carter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influence of overlapping genes on the evolution of human hepatitis B virus

(2013) Carolina Torres et al.   VIROLOGY

The measles virus phosphoprotein interacts with the linker domain of STAT1

(2013) Patricia Devaux et al.   VIROLOGY

Viral Proteins Originated De Novo by Overprinting Can Be Identified by Codon Usage: Application to the “Gene Nursery” of Deltaretroviruses

(2013) Angelo Pavesi et al.   PLoS Computational Biology

Overlapping structure of hepatitis B virus (HBV) genome and immune selection pressure are critical forces modulating HBV evolution

(2012) V. Cento et al.   JOURNAL OF GENERAL VIROLOGY

Further Evidence for the Likely Completeness of the Library of Solved Single Domain Protein Structures

(2012) Jeffrey Skolnick et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Nonstructural Nipah Virus C Protein Regulates both the Early Host Proinflammatory Response and Viral Virulence

(2012) C. Mathieu et al.   JOURNAL OF VIROLOGY

Evolution of Viral Proteins Originated De Novo by Overprinting

(2012) Niv Sabath et al.   MOLECULAR BIOLOGY AND EVOLUTION

The C Proteins of Human Parainfluenza Virus Type 1 Block IFN Signaling by Binding and Retaining Stat1 in Perinuclear Aggregates at the Late Endosome

(2012) Henrick Schomacker et al.   PLoS One

Detecting Remote Sequence Homology in Disordered Proteins: Discovery of Conserved Motifs in the N-Termini of Mononegavirales phosphoproteins

(2012) David Karlin et al.   PLoS One

Distinct and Overlapping Roles of Nipah Virus P Gene Products in Modulating the Human Endothelial Cell Antiviral Response

(2012) Michael K. Lo et al.   PLoS One

Mutations within the human parainfluenza virus type 3 (HPIV 3) C protein affect viral replication and host interferon induction

(2012) Greg Wells et al.   VIRUS RESEARCH

Protein sequence comparison and fold recognition: progress and good-practice benchmarking

(2011) Johannes Söding et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Measles Virus C Protein Interferes with Beta Interferon Transcription in the Nucleus

(2011) K. M. J. Sparrer et al.   JOURNAL OF VIROLOGY

Immune-Induced Evolutionary Selection Focused on a Single Reading Frame in Overlapping Hepatitis B Virus Proteins

(2011) Y. Maman et al.   JOURNAL OF VIROLOGY

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

(2011) Michael Remmert et al.   NATURE METHODS

Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures

(2011) Jean-Francois Taly et al.   Nature Protocols

FFAS server: novel features and applications

(2011) L. Jaroszewski et al.   NUCLEIC ACIDS RESEARCH

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

(2011) P. Di Tommaso et al.   NUCLEIC ACIDS RESEARCH

Domain Within the C Protein of Human Parainfluenza Virus Type 3 That Regulates Interferon Signaling

(2010) HONGXIA MAO et al.   GENE EXPRESSION

The N-terminus of Bunyamwera orthobunyavirus NSs protein is essential for interferon antagonism

(2010) I. van Knippenberg et al.   JOURNAL OF GENERAL VIROLOGY

Two Domains of the V Protein of Virulent Canine Distemper Virus Selectively Inhibit STAT1 and STAT2 Nuclear Import

(2010) A. Rothlisberger et al.   JOURNAL OF VIROLOGY

A Recombinant Measles Virus Unable To Antagonize STAT1 Function Cannot Control Inflammation and Is Attenuated in Rhesus Monkeys

(2010) P. Devaux et al.   JOURNAL OF VIROLOGY

Viral Mutation Rates

(2010) R. Sanjuan et al.   JOURNAL OF VIROLOGY

Visualization of multiple alignments, phylogenies and gene family evolution

(2010) James B Procter et al.   NATURE METHODS

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

Conserved Charged Amino Acids within Sendai Virus C Protein Play Multiple Roles in the Evasion of Innate Immune Responses

(2010) Takashi Irie et al.   PLoS One

Structural Disorder within Henipavirus Nucleoprotein and Phosphoprotein: From Predictions to Experimental Assessment

(2010) Johnny Habchi et al.   PLoS One

The Nonstructural Proteins of Nipah Virus Play a Key Role in Pathogenicity in Experimentally Infected Animals

(2010) Misako Yoneda et al.   PLoS One

Structural Disorder in Proteins of the Rhabdoviridae Replication Complex

(2010) Cedric Leyrat et al.   PROTEIN AND PEPTIDE LETTERS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Reassessing conflicting evolutionary histories of the Paramyxoviridae and the origins of respiroviruses with Bayesian multigene phylogenies

(2009) Alex J. McCarthy et al.   INFECTION GENETICS AND EVOLUTION

Genetic Analysis of Paramyxovirus Isolates from Pacific Salmon Reveals Two Independently Co-circulating Lineages

(2009) William N. Batts et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Determination of the henipavirus phosphoprotein gene mRNA editing frequencies and detection of the C, V and W proteins of Nipah virus in virus-infected cells

(2009) M. K. Lo et al.   JOURNAL OF GENERAL VIROLOGY

The Regulation of Type I Interferon Production by Paramyxoviruses

(2009) Stephen Goodbourn et al.   JOURNAL OF INTERFERON AND CYTOKINE RESEARCH

Mechanisms of Protein Kinase PKR-Mediated Amplification of Beta Interferon Induction by C Protein-Deficient Measles Virus

(2009) C. S. McAllister et al.   JOURNAL OF VIROLOGY

Overlapping Genes Produce Proteins with Unusual Sequence Properties and Offer Insight into De Novo Protein Creation

(2009) C. Rancurel et al.   JOURNAL OF VIROLOGY

Nipah Virus Sequesters Inactive STAT1 in the Nucleus via a P Gene-Encoded Mechanism

(2009) M. J. Ciancanelli et al.   JOURNAL OF VIROLOGY

Sequence context-specific profiles for homology searching

(2009) A. Biegert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

N-terminally truncated C protein, CNΔ25, of human parainfluenza virus type 3 is a potent inhibitor of viral replication

(2009) Hongxia Mao et al.   VIROLOGY

Antagonism of Innate Immunity by Paramyxovirus Accessory Proteins

(2009) Raychel Chambers et al.   Viruses-Basel

Differential Regulation of Type I Interferon and Epidermal Growth Factor Pathways by a Human Respirovirus Virulence Factor

(2009) Grégory Caignard et al.   PLoS Pathogens

Prediction of disordered regions in proteins based on the meta approach

(2008) T. Ishida et al.   BIOINFORMATICS

Innate immune response to viral infection

(2008) Shohei Koyama et al.   CYTOKINE

Inhibition of interferon induction and signaling by paramyxoviruses

(2008) Judith M. Fontana et al.   IMMUNOLOGICAL REVIEWS

The emergence of Nipah virus, a highly pathogenic paramyxovirus

(2008) Michael K. Lo et al.   JOURNAL OF CLINICAL VIROLOGY

The C, V and W proteins of Nipah virus inhibit minigenome replication

(2008) K. Sleeman et al.   JOURNAL OF GENERAL VIROLOGY

Human Parainfluenza Virus Type 1 C Proteins Are Nonessential Proteins That Inhibit the Host Interferon and Apoptotic Responses and Are Required for Efficient Replication in Nonhuman Primates

(2008) E. J. Bartlett et al.   JOURNAL OF VIROLOGY

Measles Virus Circumvents the Host Interferon Response by Different Actions of the C and V Proteins

(2008) Y. Nakatsu et al.   JOURNAL OF VIROLOGY

Sendai Virus C Protein Plays a Role in Restricting PKR Activation by Limiting the Generation of Intracellular Double-Stranded RNA

(2008) K. Takeuchi et al.   JOURNAL OF VIROLOGY

The C Proteins of Human Parainfluenza Virus Type 1 (HPIV1) Control the Transcription of a Broad Array of Cellular Genes That Would Otherwise Respond to HPIV1 Infection

(2008) J. B. Boonyaratanakornkit et al.   JOURNAL OF VIROLOGY

The Jpred 3 secondary structure prediction server

(2008) C. Cole et al.   NUCLEIC ACIDS RESEARCH

Regulation of interferon signaling by the C and V proteins from attenuated and wild-type strains of measles virus

(2008) Judith M. Fontana et al.   VIROLOGY

The rinderpest virus non-structural C protein blocks the induction of type 1 interferon

(2008) Emma L. Boxer et al.   VIROLOGY