Four Genotyping Schemes for Phylogenetic Analysis of Pseudomonas aeruginosa: Comparison of Their Congruence with Multi-Locus Sequence Typing

Rapid Identification of International Multidrug-Resistant Pseudomonas aeruginosa Clones by Multiple-Locus Variable Number of Tandem Repeats Analysis and Investigation of Their Susceptibility to Lytic Bacteriophages

(2012) Jérôme Larché et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Diverse Sequence Types of Klebsiella pneumoniae Contribute to the Dissemination ofblaNDM-1in India, Sweden, and the United Kingdom

(2012) Christian G. Giske et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

A new highly discriminatory multiplex capillary-based MLVA assay as a tool for the epidemiological survey of Pseudomonas aeruginosa in cystic fibrosis patients

(2012) D. Sobral et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

High-Throughput Multilocus Sequence Typing: Bringing Molecular Typing to the Next Level

(2012) Stefan A. Boers et al.   PLoS One

Pseudomonas aeruginosa Exhibits Frequent Recombination, but Only a Limited Association between Genotype and Ecological Setting

(2012) Timothy J. Kidd et al.   PLoS One

Evidence of Diversity among Epidemiologically Related Carbapenemase-Producing Acinetobacter baumannii Strains Belonging to International Clonal Lineage II

(2011) F. Minandri et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Controlled Performance Evaluation of the DiversiLab Repetitive-Sequence-Based Genotyping System for Typing Multidrug-Resistant Health Care-Associated Bacterial Pathogens

(2011) A. Deplano et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SPM-1-Producing Pseudomonas aeruginosa: Analysis of the Ancestor Relationship Using Multilocus Sequence Typing, Pulsed-Field Gel Electrophoresis, and Automated Ribotyping

(2011) Fernanda M. Silva et al.   Microbial Drug Resistance

Population Structure of Pseudomonas aeruginosa from Five Mediterranean Countries: Evidence for Frequent Recombination and Epidemic Occurrence of CC235

(2011) Makaoui Maatallah et al.   PLoS One

Insights into a Multidrug Resistant Escherichia coli Pathogen of the Globally Disseminated ST131 Lineage: Genome Analysis and Virulence Mechanisms

(2011) Makrina Totsika et al.   PLoS One

High-throughput bacterial SNP typing identifies distinct clusters of SalmonellaTyphi causing typhoid in Nepalese children

(2010) Kathryn E Holt et al.   BMC INFECTIOUS DISEASES

Successful application of the DiversiLab repetitive-sequence-based PCR typing system for confirmation of the circulation of a multiresistant Pseudomonas aeruginosa clone in different hospital wards

(2010) Csilla Ratkai et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Metallo- -lactamase-producing Pseudomonas putida as a reservoir of multidrug resistance elements that can be transferred to successful Pseudomonas aeruginosa clones

(2010) C. Juan et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Multilocus Sequence Types of Carbapenem-Resistant Pseudomonas aeruginosa in Singapore Carrying Metallo- -Lactamase Genes, Including the Novel blaIMP-26 Gene

(2010) T. H. Koh et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Pseudomonas aeruginosa Outbreak Linked to Mineral Water Bottles in a Neonatal Intensive Care Unit: Fast Typing by Use of High-Resolution Melting Analysis of a Variable-Number Tandem-Repeat Locus

(2010) F. Naze et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genome-Wide Single Nucleotide Polymorphism Typing Method for Identification of Bacillus anthracis Species and Strains among B. cereus Group Species

(2010) M. Kuroda et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Evaluation of the DiversiLab System for Detection of Hospital Outbreaks of Infections by Different Bacterial Species

(2010) A. C. Fluit et al.   JOURNAL OF CLINICAL MICROBIOLOGY

High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak

(2010) T. Lewis et al.   JOURNAL OF HOSPITAL INFECTION

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

(2010) Giovanna Morelli et al.   NATURE GENETICS

Population Structure of a Hybrid Clonal Group of Methicillin-Resistant Staphylococcus aureus, ST239-MRSA-III

(2010) Davida S. Smyth et al.   PLoS One

Rapid Multi-Locus Sequence Typing Using Microfluidic Biochips

(2010) Timothy D. Read et al.   PLoS One

The Population Genetics of Pseudomonas aeruginosa Isolates from Different Patient Populations Exhibits High-Level Host Specificity

(2010) Rosa van Mansfeld et al.   PLoS One

Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics

(2010) S. B. Beres et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

Bacterial population genomics and infectious disease diagnostics

(2010) Sandeep J. Joseph et al.   TRENDS IN BIOTECHNOLOGY

Nosocomial Spread of Colistin-Only-Sensitive Sequence Type 235 Pseudomonas aeruginosa Isolates Producing the Extended-Spectrum  -Lactamases GES-1 and GES-5 in Spain

(2009) E. Viedma et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

First Organisms with Acquired Metallo- -Lactamases (IMP-13, IMP-22, and VIM-2) Reported in Austria

(2009) W. Duljasz et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Molecular Epidemiology of Metallo- -Lactamase-Producing Pseudomonas aeruginosa Isolates from Norway and Sweden Shows Import of International Clones and Local Clonal Expansion

(2009) O. Samuelsen et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Multilocus variable-number tandem repeat analysis for molecular typing and phylogenetic analysis of Shigella flexneri

(2009) You-Wun Wang et al.   BMC MICROBIOLOGY

Evaluation of a nine-locus variable-number tandem-repeat scheme for typing of Pseudomonas aeruginosa

(2009) J.F. Turton et al.   CLINICAL MICROBIOLOGY AND INFECTION

Reliability of Pseudomonas aeruginosa semi-automated rep-PCR genotyping in various epidemiological situations

(2009) A. Doléans-Jordheim et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Multilocus variable-number tandem repeat analysis as a molecular tool for subtyping and phylogenetic analysis of bacterial pathogens

(2009) Chien-Shun Chiou   EXPERT REVIEW OF MOLECULAR DIAGNOSTICS

Phylogenetic understanding of clonal populations in an era of whole genome sequencing

(2009) Talima Pearson et al.   INFECTION GENETICS AND EVOLUTION

Increased prevalence and clonal dissemination of multidrug-resistant Pseudomonas aeruginosa with the blaIMP-1 gene cassette in Hiroshima

(2009) Syuntaro Kouda et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Pseudomonas aeruginosa Population Structure Revisited

(2009) Jean-Paul Pirnay et al.   PLoS One

Evolution of pathogenicity in the Bacillus cereus group

(2009) Xavier Didelot et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Characterisation of the first VIM metallo-β-lactamase-producingPseudomonas aeruginosaclinical isolate in Serbia

(2008) Zorica Lepsanovic et al.   ACTA MICROBIOLOGICA ET IMMUNOLOGICA HUNGARICA

Evolution, Population Structure, and Phylogeography of Genetically Monomorphic Bacterial Pathogens

(2008) Mark Achtman   Annual Review of Microbiology

Molecular typing indicates an important role for two international clonal complexes in dissemination of VIM-producing Pseudomonas aeruginosa clinical isolates in Hungary

(2008) Balázs Libisch et al.   RESEARCH IN MICROBIOLOGY