Unique Transcriptome Patterns of the White and Grey Matter Corroborate Structural and Functional Heterogeneity in the Human Frontal Lobe

Is Alzheimerʼs a disease of the white matter?

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RNA-Seq analysis of the parietal cortex in Alzheimer's disease reveals alternatively spliced isoforms related to lipid metabolism

(2013) James D. Mills et al.   NEUROSCIENCE LETTERS

RSeQC: quality control of RNA-seq experiments

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Signaling involved in neurite outgrowth of postnatally born subventricular zone neurons in vitro

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White matter pathology – an endophenotype for bipolar disorder?

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Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

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RNA-Seq and human complex diseases: recent accomplishments and future perspectives

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Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

An anatomically comprehensive atlas of the adult human brain transcriptome

(2012) Michael J. Hawrylycz et al.   NATURE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Transcriptome Sequencing Revealed Significant Alteration of Cortical Promoter Usage and Splicing in Schizophrenia

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Neuropathology underlying clinical variability in patients with synucleinopathies

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Development and Evolution of the Human Neocortex

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Transcriptomic analysis of autistic brain reveals convergent molecular pathology

(2011) Irina Voineagu et al.   NATURE

Integrative genomics viewer

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Whole Transcriptome Sequencing Reveals Gene Expression and Splicing Differences in Brain Regions Affected by Alzheimer's Disease

(2011) Natalie A. Twine et al.   PLoS One

Brain Perihematoma Genomic Profile Following Spontaneous Human Intracerebral Hemorrhage

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Improving RNA-Seq expression estimates by correcting for fragment bias

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Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation

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Transcriptome profiling in neurodegenerative disease

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Neurofilament Heavy Polypeptide Regulates the Akt-β-Catenin Pathway in Human Esophageal Squamous Cell Carcinoma

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Frontal White Matter Volume Is Associated with Brain Enlargement and Higher Structural Connectivity in Anthropoid Primates

(2010) Jeroen Bert Smaers et al.   PLoS One

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

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Reverse transcription-quantitative polymerase chain reaction: description of a RIN-based algorithm for accurate data normalization

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

A Transcriptome Database for Astrocytes, Neurons, and Oligodendrocytes: A New Resource for Understanding Brain Development and Function

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White matter in learning, cognition and psychiatric disorders

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Large-scale estimates of cellular origins of mRNAs: Enhancing the yield of transcriptome analyses

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