Comparative Genomics Reveals Insight into Virulence Strategies of Plant Pathogenic Oomycetes

Reconstruction of Oomycete Genome Evolution Identifies Differences in Evolutionary Trajectories Leading to Present-Day Large Gene Families

(2012) Michael F. Seidl et al.   Genome Biology and Evolution

Genomics through the lens of next-generation sequencing

(2012) John A Capra et al.   GENOME BIOLOGY

How do oomycete effectors interfere with plant life?

(2011) Joost HM Stassen et al.   CURRENT OPINION IN PLANT BIOLOGY

Molecular analyses of Pythium irregulare isolates from grapevines in South Africa suggest a single variable species

(2011) Christoffel F.J. Spies et al.   Fungal Biology

The oomycete Pythium oligandrum expresses putative effectors during mycoparasitism of Phytophthora infestans and is amenable to transformation

(2011) Neil R. Horner et al.   Fungal Biology

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer

(2011) GREGG P. ROBIDEAU et al.   Molecular Ecology Resources

Oomycete and fungal effector entry, a microbial Trojan horse

(2011) Shiv D. Kale   NEW PHYTOLOGIST

The evolutionary phylogeny of the oomycete “fungi”

(2011) Gordon W. Beakes et al.   PROTOPLASMA

Phylogenetic investigations in the genus Pseudoperonospora reveal overlooked species and cryptic diversity in the P. cubensis species cluster

(2010) Fabian Runge et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Oogonial biometry and phylogenetic analyses of the Pythium vexans species group from woody agricultural hosts in South Africa reveal distinct groups within this taxon

(2010) Christoffel F.J. Spies et al.   Fungal Biology

CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database

(2010) Byung H Park et al.   GLYCOBIOLOGY

Phylogenomic Evidence for Separate Acquisition of Plastids in Cryptophytes, Haptophytes, and Stramenopiles

(2010) D. Baurain et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Taxonomy, DNA barcoding and phylogeny of three new species of Pythium from Canada

(2010) K. Bala et al.   PERSOONIA

A Domain-Centric Analysis of Oomycete Plant Pathogen Genomes Reveals Unique Protein Organization

(2010) M. F. Seidl et al.   PLANT PHYSIOLOGY

Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1

(2010) J. I. B. Bos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient class of translocated oomycete effectors targets the host nucleus

(2010) S. Schornack et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome

(2010) L. Baxter et al.   SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Phylogenetic relationships among plant and animal parasites, and saprotrophs in Aphanomyces (Oomycetes)

(2009) Javier Diéguez-Uribeondo et al.   FUNGAL GENETICS AND BIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

(2009) Brian J. Haas et al.   NATURE

Morphological and phylogenetic analyses of Pythium species in South Africa

(2009) Adéle McLeod et al.  

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

(2008) H. Tang et al.   GENOME RESEARCH

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

(2008) Chris Bowler et al.   NATURE

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Conserved C-Terminal Motifs Required for Avirulence and Suppression of Cell Death by Phytophthora sojae effector Avr1b

(2008) D. Dou et al.   PLANT CELL

Snow mould caused by aPythiumsp.: a potential vascular plant pathogen in the maritime Antarctic

(2008) P. D. Bridge et al.   PLANT PATHOLOGY