Functional Environmental Screening of a Metagenomic Library Identifies stlA; A Unique Salt Tolerance Locus from the Human Gut Microbiome

Data mining the human gut microbiota for therapeutic targets

(2012) M. Collison et al.   BRIEFINGS IN BIOINFORMATICS

The Impact of the Gut Microbiota on Human Health: An Integrative View

(2012) Jose C. Clemente et al.   CELL

Microbial culturomics: paradigm shift in the human gut microbiome study

(2012) J.-C. Lagier et al.   CLINICAL MICROBIOLOGY AND INFECTION

Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome

(2012) Eamonn P Culligan et al.   ISME Journal

Draft Genome Sequence of Pontibacter sp. nov. BAB1700, a Halotolerant, Industrially Important Bacterium

(2012) M. N. Joshi et al.   JOURNAL OF BACTERIOLOGY

PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies

(2012) Sajia Akhter et al.   NUCLEIC ACIDS RESEARCH

IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project

(2012) Victor M. Markowitz et al.   PLoS One

Amylases without known homologues discovered in an acid mine drainage: significance and impact

(2012) François Delavat et al.   Scientific Reports

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Cj1386 Is an Ankyrin-Containing Protein Involved in Heme Trafficking to Catalase in Campylobacter jejuni

(2011) A. Flint et al.   JOURNAL OF BACTERIOLOGY

A Conserved Acidic Amino Acid Mediates the Interaction between Modulators and Co-Chaperones in Enterobacteria

(2011) Kiran Chintakayala et al.   JOURNAL OF MOLECULAR BIOLOGY

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Genome of Akkermansia muciniphila, a Dedicated Intestinal Mucin Degrader, and Its Use in Exploring Intestinal Metagenomes

(2011) Mark W. J. van Passel et al.   PLoS One

Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice

(2011) A. L. Goodman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and characterization of genes conferring salt tolerance to Escherichia coli from pond water metagenome

(2010) Raj Kishor Kapardar et al.   BIORESOURCE TECHNOLOGY

Integrating ‘-omics’ and natural product discovery platforms to investigate metabolic exchange in microbiomes

(2010) Jane Y Yang et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Sequence analysis of a salt tolerant metagenomic clone

(2010) Raj Kishor Kapardar et al.   INDIAN JOURNAL OF MICROBIOLOGY

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

(2010) Alan W Walker et al.   ISME Journal

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Cryptic prophages help bacteria cope with adverse environments

(2010) Xiaoxue Wang et al.   Nature Communications

Life in the gut: microbial responses to stress in the gastrointestinal tract

(2010) Petra Louis et al.   SCIENCE PROGRESS

Salt-responsive outer membrane proteins ofVibrio anguillarumserotype O1 as revealed by comparative proteome analysis

(2009) D.-Y. Kao et al.   JOURNAL OF APPLIED MICROBIOLOGY

Halomonas, a Newly Recognized Human Pathogen Causing Infections and Contamination in a Dialysis Center

(2009) David A. Stevens et al.   MEDICINE

Characteristics of Bacteroides fragilis lacking the major outer membrane protein, OmpA

(2009) H. M. Wexler et al.   MICROBIOLOGY-SGM

The interaction between Listeria monocytogenes and the host gastrointestinal tract

(2009) R. D. Sleator et al.   MICROBIOLOGY-SGM

PROSITE, a protein domain database for functional characterization and annotation

(2009) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

Functional diversity of ankyrin repeats in microbial proteins

(2009) Souhaila Al-Khodor et al.   TRENDS IN MICROBIOLOGY

Probiotics and gastrointestinal disease: successes, problems and future prospects

(2009) Eamonn P Culligan et al.   Gut Pathogens

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

Metagenomics

(2008) R.D. Sleator et al.   LETTERS IN APPLIED MICROBIOLOGY

Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome

(2008) B. V. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA