Sexually-Transmitted/Founder HIV-1 Cannot Be Directly Predicted from Plasma or PBMC-Derived Viral Quasispecies in the Transmitting Partner

Clinical significance of HIV-1 coreceptor usage

(2013) Hanneke Schuitemaker et al.   Journal of Translational Medicine

Female Genital Tract Shedding of CXCR4-Tropic HIV Type 1 Is Associated with a Majority Population of CXCR4-Tropic HIV Type 1 in Blood and Declining CD4+ Cell Counts

(2012) Richard E. Haaland et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Previously Transmitted HIV-1 Strains Are Preferentially Selected During Subsequent Sexual Transmissions

(2012) Andrew D. Redd et al.   JOURNAL OF INFECTIOUS DISEASES

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization of Human Immunodeficiency Virus Type 1 (HIV-1) Diversity and Tropism in 145 Patients With Primary HIV-1 Infection

(2011) P. Rieder et al.   CLINICAL INFECTIOUS DISEASES

Presence of CXCR4-Using HIV-1 in Patients With Recently Diagnosed Infection: Correlates and Evidence for Transmission

(2011) Kristen Chalmet et al.   JOURNAL OF INFECTIOUS DISEASES

Selective transmission of R5 HIV-1 variants: where is the gatekeeper?

(2011) Jean-Charles Grivel et al.   Journal of Translational Medicine

Genital Tract Sequestration of SIV following Acute Infection

(2011) James B. Whitney et al.   PLoS Pathogens

Low Frequency of CXCR4-Using Viruses in Patients at the Time of Primary Non-Subtype-B HIV-1 Infection

(2010) P. Frange et al.   JOURNAL OF CLINICAL MICROBIOLOGY

High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men

(2010) Hui Li et al.   PLoS Pathogens

No evidence of a change in HIV-1 virulence since 1996 in France

(2009) Pénélope Troude et al.   AIDS

Performance of an immunoassay at detecting recent infection among reported HIV diagnoses

(2009) Stéphane Le Vu et al.   AIDS

Modeling sequence evolution in acute HIV-1 infection

(2009) Ha Youn Lee et al.   JOURNAL OF THEORETICAL BIOLOGY

Quantitating the Multiplicity of Infection with Human Immunodeficiency Virus Type 1 Subtype C Reveals a Non-Poisson Distribution of Transmitted Variants

(2009) M.-R. Abrahams et al.   JOURNAL OF VIROLOGY

Inflammatory Genital Infections Mitigate a Severe Genetic Bottleneck in Heterosexual Transmission of Subtype A and C HIV-1

(2009) Richard E. Haaland et al.   PLoS Pathogens

Origin and evolutionary history of HIV-1 subtype C in Brazil

(2008) Gonzalo Bello et al.   AIDS

HIV‐1 Variation before Seroconversion in Men Who Have Sex with Men: Analysis of Acute/Early HIV Infection in the Multicenter AIDS Cohort Study

(2008) Geoffrey S. Gottlieb et al.   JOURNAL OF INFECTIOUS DISEASES

Deciphering Human Immunodeficiency Virus Type 1 Transmission and Early Envelope Diversification by Single-Genome Amplification and Sequencing

(2008) J. F. Salazar-Gonzalez et al.   JOURNAL OF VIROLOGY

Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics

(2008) V. N. Minin et al.   MOLECULAR BIOLOGY AND EVOLUTION