Adaptation of Maize to Temperate Climates: Mid-Density Genome-Wide Association Genetics and Diversity Patterns Reveal Key Genomic Regions, with a Major Contribution of the Vgt2 (ZCN8) Locus

Regulation of Flowering by Trehalose-6-Phosphate Signaling in Arabidopsis thaliana

(2013) V. Wahl et al.   SCIENCE

Genome-wide association mapping of flowering time and northern corn leaf blight (Setosphaeria turcica) resistance in a vast commercial maize germplasm set

(2012) Delphine Van Inghelandt et al.   BMC PLANT BIOLOGY

Comparative population genomics of maize domestication and improvement

(2012) Matthew B Hufford et al.   NATURE GENETICS

Maize HapMap2 identifies extant variation from a genome in flux

(2012) Jer-Ming Chia et al.   NATURE GENETICS

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

(2012) Vincent Segura et al.   NATURE GENETICS

Historical genomics of North American maize

(2012) J. van Heerwaarden et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A European perspective on maize history

(2011) Maud Irène Tenaillon et al.   COMPTES RENDUS BIOLOGIES

Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness

(2011) B Mangin et al.   HEREDITY

ZCN8 encodes a potential orthologue of Arabidopsis FT florigen that integrates both endogenous and photoperiod flowering signals in maize

(2011) Chloë M. Lazakis et al.   JOURNAL OF EXPERIMENTAL BOTANY

Gene Flow-Dependent Genomic Divergence between Anopheles gambiae M and S Forms

(2011) D. Weetman et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome

(2011) Martin W. Ganal et al.   PLoS One

Extent and genome-wide distribution of linkage disequilibrium in commercial maize germplasm

(2011) Delphine Van Inghelandt et al.   THEORETICAL AND APPLIED GENETICS

Nonlinear heat effects on African maize as evidenced by historical yield trials

(2011) David B. Lobell et al.   Nature Climate Change

DNA polymorphisms and haplotype patterns of transcription factors involved in barley endosperm development are associated with key agronomic traits

(2010) Grit Haseneyer et al.   BMC PLANT BIOLOGY

SPECIATION IN THE EUROPEAN RABBIT (ORYCTOLAGUS CUNICULUS): ISLANDS OF DIFFERENTIATION ON THE X CHROMOSOME AND AUTOSOMES

(2010) Miguel Carneiro et al.   EVOLUTION

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Contrasted patterns of selection since maize domestication on duplicated genes encoding a starch pathway enzyme

(2010) J. Corbi et al.   THEORETICAL AND APPLIED GENETICS

Population structure and genetic diversity in a commercial maize breeding program assessed with SSR and SNP markers

(2010) Delphine Van Inghelandt et al.   THEORETICAL AND APPLIED GENETICS

Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature

(2010) Benjamin Brachi et al.   PLoS Genetics

CoCoa: a software tool for estimating the coefficient of coancestry from multilocus genotype data

(2009) S. Maenhout et al.   BIOINFORMATICS

Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies

(2009) Priya Duggal et al.   BMC GENOMICS

Fine Mapping and Haplotype Structure Analysis of a Major Flowering Time Quantitative Trait Locus on Maize Chromosome 10

(2009) Sébastien Ducrocq et al.   GENETICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Genomic prediction of simulated multibreed and purebred performance using observed fifty thousand single nucleotide polymorphism genotypes1

(2009) K. Kizilkaya et al.   JOURNAL OF ANIMAL SCIENCE

Post-Domestication Selection in the Maize Starch Pathway

(2009) Longjiang Fan et al.   PLoS One

Genetic Characterization and Linkage Disequilibrium Estimation of a Global Maize Collection Using SNP Markers

(2009) Jianbing Yan et al.   PLoS One

Genetic Properties of the Maize Nested Association Mapping Population

(2009) M. D. McMullen et al.   SCIENCE

The Genetic Architecture of Maize Flowering Time

(2009) E. S. Buckler et al.   SCIENCE

A First-Generation Haplotype Map of Maize

(2009) M. A. Gore et al.   SCIENCE

Maize Centromere Structure and Evolution: Sequence Analysis of Centromeres 2 and 5 Reveals Dynamic Loci Shaped Primarily by Retrotransposons

(2009) Thomas K. Wolfgruber et al.   PLoS Genetics

Population structure and genetic diversity of New World maize races assessed by DNA microsatellites

(2008) Y. Vigouroux et al.   AMERICAN JOURNAL OF BOTANY

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

(2008) K. Strimmer   BIOINFORMATICS

A unified approach to false discovery rate estimation

(2008) Korbinian Strimmer   BMC BIOINFORMATICS

Nonparametric Methods for Incorporating Genomic Information Into Genetic Evaluations: An Application to Mortality in Broilers

(2008) O. Gonzalez-Recio et al.   GENETICS

Recombination and Speciation: Loci Near Centromeres Are More Differentiated Than Loci Near Telomeres Between Subspecies of the European Rabbit (Oryctolagus cuniculus)

(2008) M. Carneiro et al.   GENETICS

Key Impact of Vgt1 on Flowering Time Adaptation in Maize: Evidence From Association Mapping and Ecogeographical Information

(2008) S. Ducrocq et al.   GENETICS

Reproducing Kernel Hilbert Spaces Regression Methods for Genomic Assisted Prediction of Quantitative Traits

(2008) D. Gianola et al.   GENETICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

Molecular evidence for post-domestication selection in the Waxy gene of Chinese waxy maize

(2008) Longjiang Fan et al.   MOLECULAR BREEDING

Genotype, haplotype and copy-number variation in worldwide human populations

(2008) Mattias Jakobsson et al.   NATURE

Florigen and the Photoperiodic Control of Flowering in Rice

(2008) Hiroyuki Tsuji et al.   Rice