Transmembrane Protein Alignment and Fold Recognition Based on Predicted Topology

Improving transmembrane protein consensus topology prediction using inter-helical interaction

(2012) Han Wang et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

MP-T: improving membrane protein alignment for structure prediction

(2012) Jamie R. Hill et al.   BIOINFORMATICS

Three-Dimensional Structures of Membrane Proteins from Genomic Sequencing

(2012) Thomas A. Hopf et al.   CELL

Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis

(2012) T. Nugent et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

(2011) Y. Yang et al.   BIOINFORMATICS

Solvent and Lipid Accessibility Prediction as a Basis for Model Quality Assessment in Soluble and Membrane Proteins

(2011) Mukta Phatak et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Incorporation of Local Structural Preference Potential Improves Fold Recognition

(2011) Yun Hu et al.   PLoS One

Altered Antibiotic Transport in OmpC Mutants Isolated from a Series of Clinical Strains of Multi-Drug Resistant E. coli

(2011) Hubing Lou et al.   PLoS One

De novo protein structure prediction by dynamic fragment assembly and conformational space annealing

(2011) Juyong Lee et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

MEDELLER: homology-based coordinate generation for membrane proteins

(2010) Sebastian Kelm et al.   BIOINFORMATICS

How significant is a protein structure similarity with TM-score = 0.5?

(2010) Jinrui Xu et al.   BIOINFORMATICS

High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH

(2010) Florian Teichert et al.   BMC BIOINFORMATICS

MPRAP: An accessibility predictor for a-helical transmem-brane proteins that performs well inside and outside the membrane

(2010) Kristoffer Illergård et al.   BMC BIOINFORMATICS

Transmembrane protein topology prediction using support vector machines

(2009) Timothy Nugent et al.   BMC BIOINFORMATICS

Prediction of membrane spanning segments and topology in β-barrel membrane proteins at better accuracy

(2009) Yu-yen Ou et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

MemBrain: Improving the Accuracy of Predicting Transmembrane Helices

(2008) Hongbin Shen et al.   PLoS One

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

(2008) Sitao Wu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Enhanced Membrane Protein Topology Prediction Using a Hierarchical Classification Method and a New Scoring Function

(2007) Allan Lo et al.   JOURNAL OF PROTEOME RESEARCH

Improved detection of homologous membrane proteins by inclusion of information from topology predictions

(2002) Maria Hedman et al.   PROTEIN SCIENCE

Transmembrane helix predictions revisited

(2002) Chien Peter Chen et al.   PROTEIN SCIENCE