iGPCR-Drug: A Web Server for Predicting Interaction between GPCRs and Drugs in Cellular Networking

propy: a tool to generate various modes of Chou’s PseAAC

(2013) Dong-Sheng Cao et al.   BIOINFORMATICS

EuLoc: a web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou’s PseAAC

(2013) Tzu-Hao Chang et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

A Multilabel Model Based on Chou’s Pseudo–Amino Acid Composition for Identifying Membrane Proteins with Both Single and Multiple Functional Types

(2013) Chao Huang et al.   JOURNAL OF MEMBRANE BIOLOGY

GOASVM: A subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-amino acid composition

(2013) Shibiao Wan et al.   JOURNAL OF THEORETICAL BIOLOGY

Some remarks on predicting multi-label attributes in molecular biosystems

(2013) Kuo-Chen Chou   Molecular BioSystems

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

(2013) Wei Chen et al.   NUCLEIC ACIDS RESEARCH

Predicting Antibacterial Peptides by the Concept of Chou's Pseudo-amino Acid Composition and Machine Learning Methods

(2013) Maede Khosravian et al.   PROTEIN AND PEPTIDE LETTERS

Signal Propagation in Protein Interaction Network during Colorectal Cancer Progression

(2013) Yang Jiang et al.   Biomed Research International

PseAAC-Builder: A cross-platform stand-alone program for generating various special Chou’s pseudo-amino acid compositions

(2012) Pufeng Du et al.   ANALYTICAL BIOCHEMISTRY

Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou’s pseudo amino acid composition

(2012) Yen-Kuang Chen et al.   JOURNAL OF THEORETICAL BIOLOGY

Prediction of Allergenic Proteins by Means of the Concept of Chou's Pseudo Amino Acid Composition and a Machine Learning Approach

(2012) Hassan Mohabatkar et al.   Medicinal Chemistry

Identifying protein quaternary structural attributes by incorporating physicochemical properties into the general form of Chou's PseAAC via discrete wavelet transform

(2012) Xing-Yu Sun et al.   Molecular BioSystems

iNR-PhysChem: A Sequence-Based Predictor for Identifying Nuclear Receptors and Their Subfamilies via Physical-Chemical Property Matrix

(2012) Xuan Xiao et al.   PLoS One

Identification of Colorectal Cancer Related Genes with mRMR and Shortest Path in Protein-Protein Interaction Network

(2012) Bi-Qing Li et al.   PLoS One

Predicting Secretory Proteins of Malaria Parasite by Incorporating Sequence Evolution Information into Pseudo Amino Acid Composition via Grey System Model

(2012) Wei-Zhong Lin et al.   PLoS One

iNuc-PhysChem: A Sequence-Based Predictor for Identifying Nucleosomes via Physicochemical Properties

(2012) Wei Chen et al.   PLoS One

Prediction of Apoptosis Protein Locations with Genetic Algorithms and Support Vector Machines Through a New Mode of Pseudo Amino Acid Composition

(2012) Krishna Kumar Kandaswamy et al.   PROTEIN AND PEPTIDE LETTERS

Identifying GPCRs and their Types with Chou's Pseudo Amino Acid Composition: An Approach from Multi-scale Energy Representation and Position Specific Scoring Matrix

(2012) Zia-ur-Rehman et al.   PROTEIN AND PEPTIDE LETTERS

Discriminating Outer Membrane Proteins with Fuzzy K-Nearest Neighbor Algorithms Based on the General Form of Chou’s PseAAC

(2012) Maqsood Hayat et al.   PROTEIN AND PEPTIDE LETTERS

Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information

(2011) Loris Nanni et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Indexing molecules with chemical graph identifiers

(2011) Elisabet Gregori-Puigjané et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Two-intermediate model to characterize the structure of fast-folding proteins

(2011) I. Roterman et al.   JOURNAL OF THEORETICAL BIOLOGY

Prediction of GABAA receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine

(2011) Hassan Mohabatkar et al.   JOURNAL OF THEORETICAL BIOLOGY

Mitochondrial uncoupling protein 2 structure determined by NMR molecular fragment searching

(2011) Marcelo J. Berardi et al.   NATURE

NR-2L: A Two-Level Predictor for Identifying Nuclear Receptor Subfamilies Based on Sequence-Derived Features

(2011) Pu Wang et al.   PLoS One

iDNA-Prot: Identification of DNA Binding Proteins Using Random Forest with Grey Model

(2011) Wei-Zhong Lin et al.   PLoS One

Open Babel: An open chemical toolbox

(2011) Noel M O'Boyle et al.   Journal of Cheminformatics

Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework

(2010) Y. Yamanishi et al.   BIOINFORMATICS

A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction

(2010) Sitanshu Sekhar Sahu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Supersecondary structure prediction using Chou's pseudo amino acid composition

(2010) Dongsheng Zou et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

GPCR-2L: predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions

(2010) Xuan Xiao et al.   Molecular BioSystems

Quat-2L: a web-server for predicting protein quaternary structural attributes

(2010) Xuan Xiao et al.   MOLECULAR DIVERSITY

The structural basis for intramembrane assembly of an activating immunoreceptor complex

(2010) Matthew E Call et al.   NATURE IMMUNOLOGY

Predicting Drug-Target Interaction Networks Based on Functional Groups and Biological Features

(2010) Zhisong He et al.   PLoS One

Prediction of Cyclin Proteins Using Chous Pseudo Amino Acid Composition

(2010) Hassan Mohabatkar   PROTEIN AND PEPTIDE LETTERS

Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses

(2009) Maryam Esmaeili et al.   JOURNAL OF THEORETICAL BIOLOGY

Solution structure and functional analysis of the influenza B proton channel

(2009) Junfeng Wang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

GPCR-GIA: a web-server for identifying G-protein coupled receptors and their families with grey incidence analysis

(2009) Wei-Zhong Lin et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Genetic programming for creating Chou’s pseudo amino acid based features for submitochondria localization

(2008) Loris Nanni et al.   AMINO ACIDS

Prediction of drug-target interaction networks from the integration of chemical and genomic spaces

(2008) Y. Yamanishi et al.   BIOINFORMATICS

Regulation of T Cell Receptor Activation by Dynamic Membrane Binding of the CD3ɛ Cytoplasmic Tyrosine-Based Motif

(2008) Chenqi Xu et al.   CELL

Using grey dynamic modeling and pseudo amino acid composition to predict protein structural classes

(2008) Xuan Xiao et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition

(2008) D.N. Georgiou et al.   JOURNAL OF THEORETICAL BIOLOGY

Structure and mechanism of the M2 proton channel of influenza A virus

(2008) Jason R. Schnell et al.   NATURE

PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition

(2007) Hong-Bin Shen et al.   ANALYTICAL BIOCHEMISTRY