RNA-Seq Characterization of Spinal Cord Injury Transcriptome in Acute/Subacute Phases: A Resource for Understanding the Pathology at the Systems Level

Transplantation of D15A-Expressing Glial-Restricted-Precursor-Derived Astrocytes Improves Anatomical and Locomotor Recovery after Spinal Cord Injury

(2013) Chunling Fan et al.   International Journal of Biological Sciences

Knockdown of Osteopontin Reduces the Inflammatory Response and Subsequent Size of Postsurgical Adhesions in a Murine Model

(2012) Stuart Andrews et al.   AMERICAN JOURNAL OF PATHOLOGY

Lipoprotein Lipase in the Brain and Nervous System

(2012) Hong Wang et al.   Annual Review of Nutrition

RNA-seq and microarray complement each other in transcriptome profiling

(2012) Sunitha Kogenaru et al.   BMC GENOMICS

Stromal cell-derived factor-1 alpha (SDF-1α) improves neural recovery after spinal cord contusion in rats

(2012) Adib Zendedel et al.   BRAIN RESEARCH

Opposing effects of Toll-like receptors 2 and 4 on synaptic stability in the spinal cord after peripheral nerve injury

(2012) Camila Marques Freria et al.   Journal of Neuroinflammation

Genomic Analysis of Reactive Astrogliosis

(2012) J. L. Zamanian et al.   JOURNAL OF NEUROSCIENCE

Transplantation of Mesenchymal Stem Cells Promotes an Alternative Pathway of Macrophage Activation and Functional Recovery after Spinal Cord Injury

(2012) Hideaki Nakajima et al.   JOURNAL OF NEUROTRAUMA

A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae

(2012) Intawat Nookaew et al.   NUCLEIC ACIDS RESEARCH

mTOR signalling: the molecular interface connecting metabolic stress, aging and cardiovascular diseases

(2012) Z. Yang et al.   Obesity Reviews

Alternative transcription and alternative splicing in cancer

(2012) Sharmistha Pal et al.   PHARMACOLOGY & THERAPEUTICS

Expression of Ccl11 Associates with Immune Response Modulation and Protection against Neuroinflammation in Rats

(2012) Milena Z. Adzemovic et al.   PLoS One

Age-Dependent Modulation of Cortical Transcriptomes in Spinal Cord Injury and Repair

(2012) Anne Jaerve et al.   PLoS One

Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling

(2011) Paweł P. Łabaj et al.   BIOINFORMATICS

Molecular signatures database (MSigDB) 3.0

(2011) A. Liberzon et al.   BIOINFORMATICS

Comparing Next-Generation Sequencing and Microarray Technologies in a Toxicological Study of the Effects of Aristolochic Acid on Rat Kidneys

(2011) Zhenqiang Su et al.   CHEMICAL RESEARCH IN TOXICOLOGY

CXCR4 signaling regulates remyelination by endogenous oligodendrocyte progenitor cells in a viral model of demyelination

(2011) Kevin S. Carbajal et al.   GLIA

CCL2 Released from Neuronal Synaptic Vesicles in the Spinal Cord Is a Major Mediator of Local Inflammation and Pain after Peripheral Nerve Injury

(2011) J. Van Steenwinckel et al.   JOURNAL OF NEUROSCIENCE

Lipocalin 2 Plays an Immunomodulatory Role and Has Detrimental Effects after Spinal Cord Injury

(2011) K. I. Rathore et al.   JOURNAL OF NEUROSCIENCE

Genetic Variant of BDNF (Val66Met) Polymorphism Attenuates Stroke-Induced Angiogenic Responses by Enhancing Anti-Angiogenic Mediator CD36 Expression

(2011) L. Qin et al.   JOURNAL OF NEUROSCIENCE

Spatiotemporal CCR1, CCL3(MIP-1α), CXCR4, CXCL12(SDF-1α) expression patterns in a rat spinal cord injury model of posttraumatic neuropathic pain

(2011) Friederike Knerlich-Lukoschus et al.   JOURNAL OF NEUROSURGERY-SPINE

In Vitro Model of Vascularized Bone: Synergizing Vascular Development and Osteogenesis

(2011) Cristina Correia et al.   PLoS One

A simple and fast method to determine the parameters for fuzzy c–means cluster analysis

(2010) Veit Schwämmle et al.   BIOINFORMATICS

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

(2010) James R Bradford et al.   BMC GENOMICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing

(2010) J. Q. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Astrocytes: biology and pathology

(2009) Michael V. Sofroniew et al.   ACTA NEUROPATHOLOGICA

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Estimating accuracy of RNA-Seq and microarrays with proteomics

(2009) Xing Fu et al.   BMC GENOMICS

IL-10 promotes neuronal survival following spinal cord injury

(2009) Zhigang Zhou et al.   EXPERIMENTAL NEUROLOGY

TRAF-Interacting Protein with a Forkhead-Associated Domain B (TIFAB) Is a Negative Regulator of the TRAF6-Induced Cellular Functions

(2009) T. Matsumura et al.   JOURNAL OF BIOCHEMISTRY

Identification of Two Distinct Macrophage Subsets with Divergent Effects Causing either Neurotoxicity or Regeneration in the Injured Mouse Spinal Cord

(2009) K. A. Kigerl et al.   JOURNAL OF NEUROSCIENCE

Genetic Ablation of Transcription Repressor Bach1 Reduces Neural Tissue Damage and Improves Locomotor Function after Spinal Cord Injury in Mice

(2009) Haruo Kanno et al.   JOURNAL OF NEUROTRAUMA

Anatomical and Functional Outcomes following a Precise, Graded, Dorsal Laceration Spinal Cord Injury in C57BL/6 Mice

(2009) Rachel L. Hill et al.   JOURNAL OF NEUROTRAUMA

Comparison of Immunopathology and Locomotor Recovery in C57BL/6, BUB/BnJ, and NOD-SCID Mice after Contusion Spinal Cord Injury

(2009) Sabina Luchetti et al.   JOURNAL OF NEUROTRAUMA

Subcellular targeting strategies for drug design and delivery

(2009) Lawrence Rajendran et al.   NATURE REVIEWS DRUG DISCOVERY

The expression and activity of brain lipoprotein lipase is increased after acute cerebral ischemia-reperfusion in rats

(2009) Xiaojuan Wang et al.   NEUROPATHOLOGY

Synaptic Plasticity, Neurogenesis, and Functional Recovery after Spinal Cord Injury

(2009) Corinna Darian-Smith   NEUROSCIENTIST

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

FGD2, a CDC42-specific Exchange Factor Expressed by Antigen-presenting Cells, Localizes to Early Endosomes and Active Membrane Ruffles

(2008) Christoph Huber et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

STAT3 is a Critical Regulator of Astrogliosis and Scar Formation after Spinal Cord Injury

(2008) J. E. Herrmann et al.   JOURNAL OF NEUROSCIENCE

What would you do if you could sequence everything?

(2008) Avak Kahvejian et al.   NATURE BIOTECHNOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Current status of acute spinal cord injury pathophysiology and emerging therapies: promise on the horizon

(2008) James W. Rowland et al.   Neurosurgical Focus

IL-1β signaling is required for mechanical allodynia induced by nerve injury and for the ensuing reduction in spinal cord neuronal GRK2

(2007) Wendy Kleibeuker et al.   BRAIN BEHAVIOR AND IMMUNITY