Integration of Biochemical and Electrical Signaling-Multiscale Model of the Medium Spiny Neuron of the Striatum

A Whole-Cell Computational Model Predicts Phenotype from Genotype

(2012) Jonathan R. Karr et al.   CELL

Automated Capture of Experiment Context for Easier Reproducibility in Computational Research

(2012) Andrew Davison   COMPUTING IN SCIENCE & ENGINEERING

Calcium Input Frequency, Duration and Amplitude Differentially Modulate the Relative Activation of Calcineurin and CaMKII

(2012) Lu Li et al.   PLoS One

Neuronvisio: A Graphical User Interface with 3D Capabilities for NEURON

(2012) Michele Mattioni et al.   Frontiers in Neuroinformatics

Multiscale interactions between chemical and electric signaling in LTP induction, LTP reversal and dendritic excitability

(2011) Upinder S. Bhalla   NEURAL NETWORKS

The Dendritic Branch Is the Preferred Integrative Unit for Protein Synthesis-Dependent LTP

(2011) Arvind Govindarajan et al.   NEURON

Tunnel structure analysis using the multi-scale modeling method

(2011) Yuan Cao et al.   TUNNELLING AND UNDERGROUND SPACE TECHNOLOGY

Brownian diffusion of AMPA receptors is sufficient to explain fast onset of LTP

(2010) Dominic P Tolle et al.   BMC Systems Biology

Quantum Mechanics/Molecular Mechanics Strategies for Docking Pose Refinement: Distinguishing between Binders and Decoys in CytochromecPeroxidase

(2010) Steven K. Burger et al.   Journal of Chemical Information and Modeling

Modelling the molecular mechanisms of synaptic plasticity using systems biology approaches

(2010) Jeanette Hellgren Kotaleski et al.   NATURE REVIEWS NEUROSCIENCE

Run-Time Interoperability Between Neuronal Network Simulators Based on the MUSIC Framework

(2010) Mikael Djurfeldt et al.   NEUROINFORMATICS

Rapid Desynchronization of an Electrically Coupled Interneuron Network with Sparse Excitatory Synaptic Input

(2010) Koen Vervaeke et al.   NEURON

AMPA receptors gate spine Ca2+ transients and spike-timing-dependent potentiation

(2010) N. Holbro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chaste: A test-driven approach to software development for biological modelling

(2009) Joe Pitt-Francis et al.   COMPUTER PHYSICS COMMUNICATIONS

Membrane Potential Changes in Dendritic Spines during Action Potentials and Synaptic Input

(2009) L. M. Palmer et al.   JOURNAL OF NEUROSCIENCE

The Systems Biology Graphical Notation

(2009) Nicolas Le Novère et al.   NATURE BIOTECHNOLOGY

PIP3 controls synaptic function by maintaining AMPA receptor clustering at the postsynaptic membrane

(2009) Kristin L Arendt et al.   NATURE NEUROSCIENCE

Dynamic Microtubules Regulate Dendritic Spine Morphology and Synaptic Plasticity

(2009) Jacek Jaworski et al.   NEURON

Synaptic AMPA Receptor Plasticity and Behavior

(2009) Helmut W. Kessels et al.   NEURON

Biphasic Synaptic Ca Influx Arising from Compartmentalized Electrical Signals in Dendritic Spines

(2009) Brenda L. Bloodgood et al.   PLOS BIOLOGY

STEPS: Modeling and simulating complex reaction-diffusion systems with Python

(2009) Stefan Wils   Frontiers in Neuroinformatics

NEURON and Python

(2009) Michael Hines   Frontiers in Neuroinformatics

Automated quantification of dendritic spine density and spine head diameter in medium spiny neurons of the nucleus accumbens

(2008) Haowei Shen et al.   Brain Structure & Function

Detailed state model of CaMKII activation and autophosphorylation

(2008) Vladan Lučić et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

Differential Excitability and Modulation of Striatal Medium Spiny Neuron Dendrites

(2008) M. Day et al.   JOURNAL OF NEUROSCIENCE

Spine Neck Plasticity Controls Postsynaptic Calcium Signals through Electrical Compartmentalization

(2008) A. Grunditz et al.   JOURNAL OF NEUROSCIENCE

An allosteric model of calmodulin explains differential activation of PP2B and CaMKII

(2008) M. I. Stefan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Large-scale model of mammalian thalamocortical systems

(2008) E. M. Izhikevich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Spread of Ras Activity Triggered by Activation of a Single Dendritic Spine

(2008) C. D. Harvey et al.   SCIENCE

Bursting activation of prefrontal cortex drives sustained up states in nucleus accumbens spiny neurons in vivo

(2008) Aaron J. Gruber et al.   SYNAPSE