4.6 Article

Kras Gene Mutation and RASSF1A, FHIT and MGMT Gene Promoter Hypermethylation: Indicators of Tumor Staging and Metastasis in Adenocarcinomatous Sporadic Colorectal Cancer in Indian Population

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PLOS ONE
Volume 8, Issue 4, Pages -

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PUBLIC LIBRARY SCIENCE
DOI: 10.1371/journal.pone.0060142

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  1. Indian Council of Medical Research, New Delhi, India
  2. Institute of Cytology & Preventive Oncology (ICMR), India

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Objective: Colorectal cancer (CRC) development involves underlying modifications at genetic/epigenetic level. This study evaluated the role of Kras gene mutation and RASSF1A, FHIT and MGMT gene promoter hypermethylation together/independently in sporadic CRC in Indian population and correlation with clinicopathological variables of the disease. Methods: One hundred and twenty four consecutive surgically resected tissues (62 tumor and equal number of normal adjacent controls) of primary sporadic CRC were included and patient details including demographic characteristics, lifestyle/food or drinking habits, clinical and histopathological profiles were recorded. Polymerase chain reaction - Restriction fragment length polymorphism and direct sequencing for Kras gene mutation and Methylation Specific-PCR for RASSF1A, FHIT and MGMT genes was performed. Results: Kras gene mutation at codon 12 & 13 and methylated RASSF1A, FHIT and MGMT gene was observed in 47%, 19%, 47%, 37% and 47% cases, respectively. Alcohol intake and smoking were significantly associated with presence of Kras mutation (codon 12) and MGMT methylation (p-value <0.049). Tumor stage and metastasis correlated with presence of mutant Kras codon 12 (p-values 0.018, 0.044) and methylated RASSF1A (p-values 0.034, 0.044), FHIT (p-values 0.001, 0.047) and MGMT (p-values 0.018, 0.044) genes. Combinatorial effect of gene mutation/methylation was also observed (p-value <0.025). Overall, tumor stage 3, moderately differentiated tumors, presence of lymphatic invasion and absence of metastasis was more frequently observed in tumors with mutated Kras and/or methylated RASSF1A, FHIT and MGMT genes. Conclusion: Synergistic interrelationship between these genes in sporadic CRC may be used as diagnostic/prognostic markers in assessing the overall pathological status of CRC.

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Review Oncology

Spatial analyses of immune cell infiltration in cancer: current methods and future directions. A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer

David B. Page, Glenn Broeckx, Chowdhury Arif Jahangir, Chowdhury Jahangir, Sara Verbandt, Rajarsi R. Gupta, Jeppe Thagaard, Reena Khiroya, Zuzana Kos, Khalid Abduljabbar, Gabriela Acosta Haab, Balazs Acs, Jonas S. Almeida, Isabel Alvarado-Cabrero, Farid Azmoudeh-Ardalan, Sunil Badve, Nurkhairul Bariyah Baharun, Enrique R. Bellolio, Vydehi Bheemaraju, Kim R. M. Blenman, Luciana Botinelly Mendonca Fujimoto, Octavio Burgues, Maggie Chon U. Cheang, Francesco Ciompi, Lee A. D. Cooper, An Coosemans, German Corredor, Flavio Luis Dantas Portela, Frederik Deman, Sandra Demaria, Sarah N. Dudgeon, Mahmoud Elghazawy, Scott Ely, Claudio Fernandez-Martin, Susan Fineberg, Stephen B. Fox, William M. Gallagher, Jennifer M. Giltnane, Sacha Gnjatic, Paula Gonzalez-Ericsson, Anita Grigoriadis, Niels Halama, Matthew G. Hanna, Aparna Harbhajanka, Alexandros Hardas, Steven N. Hart, Johan Hartman, Stephen Hewitt, Akira Hida, Hugo M. Horlings, Zaheed Husain, Evangelos Hytopoulos, Sheeba Irshad, Emiel A. M. Janssen, Mohamed Kahila, Tatsuki R. Kataoka, Kosuke Kawaguchi, Durga Kharidehal, Andrey Khramtsov, Umay Kiraz, Pawan Kirtani, Liudmila L. Kodach, Konstanty Korski, Aniko Kovacs, Anne-Vibeke Laenkholm, Corinna Lang-Schwarz, Denis Larsimont, Jochen K. Lennerz, Marvin Lerousseau, Xiaoxian Li, Amy Ly, Anant Madabhushi, Sai K. Maley, Vidya Manur Narasimhamurthy, Douglas K. Marks, Elizabeth S. McDonald, Ravi Mehrotra, Stefan Michiels, Fayyaz ul Amir Afsar Minhas, Shachi Mittal, David A. Moore, Shamim Mushtaq, Hussain Nighat, Thomas Papathomas, Frederique Penault-Llorca, Rashindrie D. Perera, Christopher J. Pinard, Juan Carlos Pinto-Cardenas, Giancarlo Pruneri, Lajos Pusztai, Arman Rahman, Nasir Mahmood Rajpoot, Bernardo Leon Rapoport, Tilman T. Rau, Jorge S. Reis-Filho, Joana M. Ribeiro, David Rimm, Anne-Vincent Salomon, Manuel Salto-Tellez, Joel Saltz, Shahin Sayed, Kalliopi P. Siziopikou, Christos Sotiriou, Albrecht Stenzinger, Maher A. Sughayer, Daniel Sur, Fraser Symmans, Sunao Tanaka, Timothy Taxter, Sabine Tejpar, Jonas Teuwen, E. Aubrey Thompson, Trine Tramm, William T. Tran, Jeroen van Der Laak, Paul J. van Diest, Gregory E. Verghese, Giuseppe Viale, Michael Vieth, Noorul Wahab, Thomas Walter, Yannick Waumans, Hannah Y. Wen, Wentao Yang, Yinyin Yuan, Sylvia Adams, John Mark Seaverns Bartlett, Sibylle Loibl, Carsten Denkert, Peter Savas, Sherene Loi, Roberto Salgado, Elisabeth Specht Stovgaard, Guray Akturk, Najat Bouchmaa

Summary: Modern histologic imaging platforms combined with machine learning methods offer new opportunities for studying the spatial distribution of immune cells in the tumor microenvironment. However, there is currently no standardized method for describing or analyzing spatial immune cell data, and most previous spatial analyses have been simplistic. In this review, two approaches (raster versus vector-based) for reporting and analyzing spatial data are outlined, along with a summary of reported spatial immune cell metrics and their prognostic associations in various cancers. Two well-described clinical biomarkers, the breast cancer stromal tumor infiltrating lymphocytes score and the colon cancer Immunoscore, are also discussed, along with potential research opportunities to improve the clinical utility of these spatial biomarkers.

JOURNAL OF PATHOLOGY (2023)

Review Public, Environmental & Occupational Health

The global impact of tobacco control policies on smokeless tobacco use: a systematic review

Aastha Chugh, Monika Arora, Neha Jain, Aishwarya Vidyasagaran, Anne Readshaw, Aziz Sheikh, Jappe Eckhardt, Kamran Siddiqi, Mansi Chopra, Masuma Pervin Mishu, Mona Kanaan, Muhammad Aziz Rahman, Ravi Mehrotra, Rumana Huque, Sarah Forberger, Suranji Dahanayake, Zohaib Khan, Melanie Boeckmann, Omara Dogar

Summary: Despite the implementation of various policies to control smokeless tobacco, their specific impact remains unclear. A systematic review found that taxation and multifaceted policy initiatives were associated with significant reductions in smokeless tobacco use. However, sales bans may be prone to smuggling issues.

LANCET GLOBAL HEALTH (2023)

Review Toxicology

From cultivation to cancer: formation of N-nitrosamines and other carcinogens in smokeless tobacco and their mutagenic implications

Stephen B. Stanfill, Stephen S. Hecht, Andreas C. Joerger, Pablo J. Gonzalez, Luisa B. Maia, Maria G. Rivas, Jose J. G. Moura, Alpana K. Gupta, Nick E. Le Brun, Jason C. Crack, Pierre Hainaut, Courtney Sparacino-Watkins, Robert E. Tyx, Suresh D. Pillai, Ghazi S. Zaatari, S. Jane Henley, Benjamin C. Blount, Clifford H. Watson, Bernd Kaina, Ravi Mehrotra

Summary: Tobacco use is a leading cause of preventable diseases and deaths worldwide. Tobacco-specific N-nitrosamines (TSNAs), potent carcinogens found in tobacco products, can form through biochemical and chemical transformations during tobacco cultivation and smokeless tobacco (ST) production. When ST is used, TSNAs are absorbed and metabolized into reactive compounds that can cause mutations in critical genes. Strategies to lower TSNA levels in tobacco products include using tobacco with lower nicotine levels, eliminating microorganisms, avoiding fermentation and fire-curing, refrigerating ST products, and adding nitrite scavenging chemicals.

CRITICAL REVIEWS IN TOXICOLOGY (2023)

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