Comparative Transcriptome Profiling Reveals Different Expression Patterns in Xanthomonas oryzae pv. oryzae Strains with Putative Virulence-Relevant Genes

Introgression of bacterial blight resistance genes Xa7, Xa21, Xa22 and Xa23 into hybrid rice restorer lines by molecular marker-assisted selection

(2012) B. Huang et al.   EUPHYTICA

Transcription activator-like (TAL) effectors targetingOsSWEETgenes enhance virulence on diverse rice (Oryza sativa) varieties when expressed individually in a TAL effector-deficient strain ofXanthomonas oryzae

(2012) Valérie Verdier et al.   NEW PHYTOLOGIST

Genomic Analysis of Xanthomonas oryzae Isolates from Rice Grown in the United States Reveals Substantial Divergence from Known X. oryzae Pathovars

(2011) L. R. Triplett et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

wapRNA: a web-based application for the processing of RNA sequences

(2011) Wenming Zhao et al.   BIOINFORMATICS

Colonization of Rice Leaf Blades by an African Strain of Xanthomonas oryzae pv. oryzae Depends on a New TAL Effector That Induces the Rice Nodulin-3 Os11N3 Gene

(2011) Yanhua Yu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Virulence Reduction and Differing Regulation of Virulence Genes in rpf Mutants of Xanthomonas oryzae pv. oryzae

(2011) Kyu-Sik Jeong et al.   Plant Pathology Journal

Emergence and Modular Evolution of a Novel Motility Machinery in Bacteria

(2011) Jennifer Luciano et al.   PLoS Genetics

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Rice bacterial blight pathogen Xanthomonas oryzae pv. oryzae produces multiple DSF-family signals in regulation of virulence factor production

(2010) Ya-Wen He et al.   BMC MICROBIOLOGY

TAL effectors: finding plant genes for disease and defense

(2010) Adam J Bogdanove et al.   CURRENT OPINION IN PLANT BIOLOGY

Mutagenesis of 18 Type III Effectors Reveals Virulence Function of XopZPXO99 in Xanthomonas oryzae pv. oryzae

(2010) Congfeng Song et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Promoter elements of rice susceptibility genes are bound and activated by specific TAL effectors from the bacterial blight pathogen, Xanthomonas oryzae pv. oryzae

(2010) Patrick Römer et al.   NEW PHYTOLOGIST

Cell-cell signal-dependent dynamic interactions between HD-GYP and GGDEF domain proteins mediate virulence in Xanthomonas campestris

(2010) R. P. Ryan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Quorum-Sensing Network Architectures

(2009) Wai-Leung Ng et al.   Annual Review of Genetics

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The type III effectors ofXanthomonas

(2009) FRANK F. WHITE et al.   MOLECULAR PLANT PATHOLOGY

Detailed analysis of the DNA recognition motifs of theXanthomonastype III effectors AvrBs3 and AvrBs3Δrep16

(2009) Sabine Kay et al.   PLANT JOURNAL

Host and Pathogen Factors Controlling the Rice-Xanthomonas oryzae Interaction

(2009) F. F. White et al.   PLANT PHYSIOLOGY

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A

(2008) Steven L Salzberg et al.   BMC GENOMICS

A two-genome microarray for the rice pathogens Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a difference in their regulation of hrp genes

(2008) Young-Su Seo et al.   BMC MICROBIOLOGY

High-resolution mapping and gene prediction of Xanthomonas Oryzae pv. Oryzae resistance gene Xa7

(2008) Shen Chen et al.   MOLECULAR BREEDING

Identification of Novel Type III Secretion Effectors inXanthomonas oryzaepv.oryzae

(2008) Ayako Furutani et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Global patterns of gene expression in rice cultivars undergoing a susceptible or resistant interaction with the parasitic plantStriga hermonthica

(2008) P. J. Swarbrick et al.   NEW PHYTOLOGIST