Network Theory Inspired Analysis of Time-Resolved Expression Data Reveals Key Players Guiding P. patens Stem Cell Development

Cancer core modules identification through genomic and transcriptomic changes correlation detection at network level

(2012) Wenting Li et al.   BMC Systems Biology

Transcriptome of Protoplasts Reprogrammed into Stem Cells in Physcomitrella patens

(2012) Lihong Xiao et al.   PLoS One

RSL genes are sufficient for rhizoid system development in early diverging land plants

(2011) G. Jang et al.   DEVELOPMENT

PhyscomitrellaCyclin-Dependent Kinase A Links Cell Cycle Reactivation to Other Cellular Changes during Reprogramming of Leaf Cells

(2011) Masaki Ishikawa et al.   PLANT CELL

Why Is There a Lack of Consensus on Molecular Subgroups of Glioblastoma? Understanding the Nature of Biological and Statistical Variability in Glioblastoma Expression Data

(2011) Nicholas F. Marko et al.   PLoS One

Variance of Gene Expression Identifies Altered Network Constraints in Neurological Disease

(2011) Jessica C. Mar et al.   PLoS Genetics

Does the core circadian clock in the moss Physcomitrella patens (Bryophyta) comprise a single loop?

(2010) Karl Holm et al.   BMC PLANT BIOLOGY

Combining theoretical analysis and experimental data generation reveals IRF9 as a crucial factor for accelerating interferon α-induced early antiviral signalling

(2010) Tim Maiwald et al.   FEBS Journal

Photoperiod-dependent regulation of cell growth by PpCCA1a and PpCCA1b genes encoding single-myb clock proteins in the moss Physcomitrella patens

(2010) Ryo Okada et al.   GENES & GENETIC SYSTEMS

Genome-Wide Phylogenetic Comparative Analysis of Plant Transcriptional Regulation: A Timeline of Loss, Gain, Expansion, and Correlation with Complexity

(2010) Daniel Lang et al.   Genome Biology and Evolution

Dynamic interaction networks in a hierarchically organized tissue

(2010) Daniel C Kirouac et al.   Molecular Systems Biology

Zebrafish Pou5f1-dependent transcriptional networks in temporal control of early development

(2010) Daria Onichtchouk et al.   Molecular Systems Biology

A basic helix-loop-helix transcription factor controls cell growth and size in root hairs

(2010) Keke Yi et al.   NATURE GENETICS

The Molecular and Physiological Responses of Physcomitrella patens to Ultraviolet-B Radiation

(2010) L. Wolf et al.   PLANT PHYSIOLOGY

Collective Dynamics of Specific Gene Ensembles Crucial for Neutrophil Differentiation: The Existence of Genome Vehicles Revealed

(2010) Masa Tsuchiya et al.   PLoS One

Regulation of stem cell maintenance by the Polycomb protein FIE has been conserved during land plant evolution

(2009) A. Mosquna et al.   DEVELOPMENT

Microarray analysis of the moss Physcomitrella patens reveals evolutionarily conserved transcriptional regulation of salt stress and abscisic acid signalling

(2009) Sandra Richardt et al.   PLANT MOLECULAR BIOLOGY

Emergent Genome-Wide Control in Wildtype and Genetically Mutated Lipopolysaccarides-Stimulated Macrophages

(2009) Masa Tsuchiya et al.   PLoS One

Decomposition of Gene Expression State Space Trajectories

(2009) Jessica C. Mar et al.   PLoS Computational Biology

The plastid sigma factor SIG5 is involved in the diurnal regulation of the chloroplast genepsbDin the mossPhyscomitrella patens

(2008) Kazuhiro Ichikawa et al.   FEBS LETTERS

Gene network dynamics controlling keratinocyte migration

(2008) Hauke Busch et al.   Molecular Systems Biology

Regulation of retinal cell fate specification by multiple transcription factors

(2007) Ryosuke Ohsawa et al.   BRAIN RESEARCH