On the Power and the Systematic Biases of the Detection of Chromosomal Inversions by Paired-End Genome Sequencing
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Title
On the Power and the Systematic Biases of the Detection of Chromosomal Inversions by Paired-End Genome Sequencing
Authors
Keywords
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Journal
PLoS One
Volume 8, Issue 4, Pages e61292
Publisher
Public Library of Science (PLoS)
Online
2014-04-30
DOI
10.1371/journal.pone.0061292
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- (2010) Andy W Pang et al. GENOME BIOLOGY
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- (2009) H. Li et al. BIOINFORMATICS
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- (2009) S.-M. Ahn et al. GENOME RESEARCH
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