Promoters of Escherichia coli versus Promoter Islands: Function and Structure Comparison

High-Density Transcriptional Initiation Signals Underline Genomic Islands in Bacteria

(2012) Qianli Huang et al.   PLoS One

AID targeting is dependent on RNA polymerase II pausing

(2012) Amy L. Kenter   SEMINARS IN IMMUNOLOGY

Analysis of microRNA-size, small RNAs in Streptococcus mutans by deep sequencing

(2011) Heon-Jin Lee et al.   FEMS MICROBIOLOGY LETTERS

NanoRNAs Prime Transcription Initiation In Vivo

(2011) Seth R. Goldman et al.   MOLECULAR CELL

In vitro transcription profiling of the σ S subunit of bacterial RNA polymerase: re-definition of the σ S regulon and identification of σ S -specific promoter sequence elements

(2011) Anna Maciąg et al.   NUCLEIC ACIDS RESEARCH

Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12

(2011) Ana I. Prieto et al.   NUCLEIC ACIDS RESEARCH

Activation-Induced Cytidine Deaminase Targets DNA at Sites of RNA Polymerase II Stalling by Interaction with Spt5

(2010) Rushad Pavri et al.   CELL

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli

(2010) Christina Kahramanoglou et al.   NUCLEIC ACIDS RESEARCH

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

(2010) S. Gama-Castro et al.   NUCLEIC ACIDS RESEARCH

Predicting strength and function for promoters of the Escherichia coli alternative sigma factor,  E

(2010) V. A. Rhodius et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread Antisense Transcription in Escherichia coli

(2010) J. E. Dornenburg et al.   mBio

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

(2009) M. G. I. Langille et al.   BIOINFORMATICS

Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli

(2009) Alfredo Mendoza-Vargas et al.   PLoS One

DNAPlotter: circular and linear interactive genome visualization

(2008) T. Carver et al.   BIOINFORMATICS

The P1 promoter of theEscherichia coli rpoHgene is utilized by σ70-RNAP or σS-RNAP depending on growth phase

(2008) Anna Janaszak et al.   FEMS MICROBIOLOGY LETTERS

Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts

(2008) B.-K. Cho et al.   GENOME RESEARCH

DiProDB: a database for dinucleotide properties

(2008) Maik Friedel et al.   NUCLEIC ACIDS RESEARCH

Powerful mutators lurking in the genome

(2008) V. Petit et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli

(2008) Morgan N Price et al.   GENOME BIOLOGY