Global Analysis of mRNA Half-Lives and de novo Transcription in a Dinoflagellate, Karenia brevis

Synergistic and Multidimensional Regulation of Plasminogen Activator Inhibitor Type 1 Expression by Transforming Growth Factor Type β and Epidermal Growth Factor

(2012) Xiaoling Song et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Dinoflagellate tandem array gene transcripts are highly conserved and not polycistronic

(2012) M. Beauchemin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptomic response of the red tide dinoflagellate, Karenia brevis, to nitrogen and phosphorus depletion and addition

(2011) Jeanine S Morey et al.   BMC GENOMICS

Growth- and nutrient-dependent gene expression in the toxigenic marine dinoflagellate Alexandrium minutum

(2011) Ines Yang et al.   HARMFUL ALGAE

Post-transcriptional Regulation of S-Phase Genes in the Dinoflagellate, Karenia brevis

(2011) STEPHANIE A. BRUNELLE et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Transcriptome remodeling associated with chronological aging in the dinoflagellate, Karenia brevis

(2011) Jillian G. Johnson et al.   Marine Genomics

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

(2011) Michal Rabani et al.   NATURE BIOTECHNOLOGY

The role of the 5'-3' exoribonuclease XRNA in transcriptome-wide mRNA degradation

(2011) T. Manful et al.   RNA

Dinoflagellate Genome Evolution

(2010) Jennifer H. Wisecaver et al.   Annual Review of Microbiology

HALO--a Java framework for precise transcript half-life determination

(2010) C. C. Friedel et al.   BIOINFORMATICS

CHARACTERIZATION AND EXPRESSION OF NUCLEAR-ENCODED POLYKETIDE SYNTHASES IN THE BREVETOXIN-PRODUCING DINOFLAGELLATE KARENIA BREVIS1

(2010) Emily A. Monroe et al.   JOURNAL OF PHYCOLOGY

Transcriptome Profiling of a Toxic Dinoflagellate Reveals a Gene-Rich Protist and a Potential Impact on Gene Expression Due to Bacterial Presence

(2010) Ahmed Moustafa et al.   PLoS One

Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus

(2010) Claudia Steglich et al.   GENOME BIOLOGY

Metabolic tagging and purification of nascent RNA: implications for transcriptomics

(2009) Caroline C. Friedel et al.   Molecular BioSystems

TU-tagging: cell type–specific RNA isolation from intact complex tissues

(2009) Michael R Miller et al.   NATURE METHODS

Conserved principles of mammalian transcriptional regulation revealed by RNA half-life

(2009) Caroline C. Friedel et al.   NUCLEIC ACIDS RESEARCH

Distinct Gene Number-Genome Size Relationships for Eukaryotes and Non-Eukaryotes: Gene Content Estimation for Dinoflagellate Genomes

(2009) Yubo Hou et al.   PLoS One

Database for mRNA Half-Life of 19 977 Genes Obtained by DNA Microarray Analysis of Pluripotent and Differentiating Mouse Embryonic Stem Cells

(2008) L. V. Sharova et al.   DNA RESEARCH

The Florida red tide dinoflagellate Karenia brevis: New insights into cellular and molecular processes underlying bloom dynamics

(2008) Frances M. Van Dolah et al.   HARMFUL ALGAE

From Stop to Start: Tandem Gene Arrangement, Copy Number and Trans-Splicing Sites in the Dinoflagellate Amphidinium carterae

(2008) Tsvetan R. Bachvaroff et al.   PLoS One

High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay

(2008) L. Dolken et al.   RNA

The transcriptional inhibitor thiolutin blocks mRNA degradation in yeast

(2007) Vicent Pelechano et al.   YEAST