Quantitative Design of Regulatory Elements Based on High-Precision Strength Prediction Using Artificial Neural Network

Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters

(2012) Eilon Sharon et al.   NATURE BIOTECHNOLOGY

Rational Diversification of a Promoter Providing Fine-Tuned Expression and Orthogonal Regulation for Synthetic Biology

(2012) Benjamin A. Blount et al.   PLoS One

GAPPromoter Library for Fine-Tuning of Gene Expression in Pichia pastoris

(2011) Xiulin Qin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A model of BmK CT in inhibiting glioma cell migration via matrix metalloproteinase-2 from experimental and molecular dynamics simulation study

(2011) Yue-Jun Fu et al.   BIOTECHNOLOGY LETTERS

Improving protein secondary structure prediction using a multi-modal BP method

(2011) Wu Qu et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Rules extraction from neural networks applied to the prediction and recognition of prokaryotic promoters

(2011) Scheila de Avila e Silva et al.   GENETICS AND MOLECULAR BIOLOGY

Parts plus pipes: Synthetic biology approaches to metabolic engineering

(2011) Patrick M. Boyle et al.   METABOLIC ENGINEERING

Integrating Quantitative Knowledge into a Qualitative Gene Regulatory Network

(2011) Jérémie Bourdon et al.   PLoS Computational Biology

RBSDesigner: software for designing synthetic ribosome binding sites that yields a desired level of protein expression

(2010) D. Na et al.   BIOINFORMATICS

A predictive model for secondary RNA structure using graph theory and a neural network

(2010) Denise R Koessler et al.   BMC BIOINFORMATICS

Enhancing the protein production levels in Escherichia coli with a strong promoter

(2010) Hanna Tegel et al.   FEBS Journal

N4: A precise and highly sensitive promoter predictor using neural network fed by nearest neighbors

(2010) Amjad Askary et al.   GENES & GENETIC SYSTEMS

Predicting strength and function for promoters of the Escherichia coli alternative sigma factor,  E

(2010) V. A. Rhodius et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BmKCT toxin inhibits glioma proliferation and tumor metastasis

(2009) Shaozhong Fan et al.   CANCER LETTERS

Automated design of synthetic ribosome binding sites to control protein expression

(2009) Howard M Salis et al.   NATURE BIOTECHNOLOGY

Measuring the activity of BioBrick promoters using an in vivo reference standard

(2009) Jason R Kelly et al.   Journal of Biological Engineering

Refinement and standardization of synthetic biological parts and devices

(2008) Barry Canton et al.   NATURE BIOTECHNOLOGY