Transcriptomic Study Reveals Widespread Spliced Leader Trans-Splicing, Short 5′-UTRs and Potential Complex Carbon Fixation Mechanisms in the Euglenoid Alga Eutreptiella sp.

The Plastid Genome of Eutreptiella Provides a Window into the Process of Secondary Endosymbiosis of Plastid in Euglenids

(2012) Štěpánka Hrdá et al.   PLoS One

Ectobiotic and Endobiotic Bacteria Associated with Eutreptiella sp. Isolated from Long Island Sound

(2012) Rita C. Kuo et al.   PROTIST

Transcriptome sequencing and annotation of the microalgae Dunaliella tertiolecta: Pathway description and gene discovery for production of next-generation biofuels

(2011) Hamid Rismani-Yazdi et al.   BMC GENOMICS

Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes

(2011) R. L. Warren et al.   GENOME RESEARCH

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

(2011) Robert Schmieder et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Inorganic carbon acquisition by eukaryotic algae: four current questions

(2010) John A. Raven   PHOTOSYNTHESIS RESEARCH

Spliced leader-based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates

(2010) S. Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Second-generation environmental sequencing unmasks marine metazoan biodiversity

(2010) Vera G. Fonseca et al.   Nature Communications

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery

(2009) Matthew C Hale et al.   BMC GENOMICS

Dinoflagellate Spliced Leader RNA Genes Display a Variety of Sequences and Genomic Arrangements

(2009) H. Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Distinct Gene Number-Genome Size Relationships for Eukaryotes and Non-Eukaryotes: Gene Content Estimation for Dinoflagellate Genomes

(2009) Yubo Hou et al.   PLoS One

Cascades of convergent evolution: The corresponding evolutionary histories of euglenozoans and dinoflagellates

(2009) J. Lukes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Food web of a SW Atlantic shallow coastal lagoon: spatial environmental variability does not impose substantial changes in the trophic structure

(2008) L Rodríguez-Graña et al.   MARINE ECOLOGY PROGRESS SERIES

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

An External  -Carbonic Anhydrase in a Free-Living Marine Dinoflagellate May Circumvent Diffusion-Limited Carbon Acquisition

(2008) M. Lapointe et al.   PLANT PHYSIOLOGY

The Airborne Metagenome in an Indoor Urban Environment

(2008) Susannah G. Tringe et al.   PLoS One