From Data towards Knowledge: Revealing the Architecture of Signaling Systems by Unifying Knowledge Mining and Data Mining of Systematic Perturbation Data

Using graph models to find transcription factor modules: the hitting set problem and an exact algorithm

(2013) Songjian Lu et al.   Algorithms for Molecular Biology

Membrane Organization and Lipid Rafts

(2011) K. Simons et al.   Cold Spring Harbor Perspectives in Biology

Identifying informative subsets of the Gene Ontology with information bottleneck methods

(2010) Bo Jin et al.   BIOINFORMATICS

Improving performances of suboptimal greedy iterative biclustering heuristics via localization

(2010) Cesim Erten et al.   BIOINFORMATICS

Assessing the functional coherence of gene sets with metrics based on the Gene Ontology graph

(2010) Adam J. Richards et al.   BIOINFORMATICS

Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity

(2009) Esti Yeger-Lotem et al.   NATURE GENETICS

Integrating Proteomic, Transcriptional, and Interactome Data Reveals Hidden Components of Signaling and Regulatory Networks

(2009) S.-s. C. Huang et al.   Science Signaling

Cellular and Mitochondrial Remodeling upon Defects in Iron-Sulfur Protein Biogenesis

(2008) Anja Hausmann et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Ergosterol promotes pheromone signaling and plasma membrane fusion in mating yeast

(2008) Hui Jin et al.   JOURNAL OF CELL BIOLOGY