The Baboon Kidney Transcriptome: Analysis of Transcript Sequence, Splice Variants, and Abundance

Expression of Heme Oxygenase-1 in Thick Ascending Loop of Henle Attenuates Angiotensin II-Dependent Hypertension

(2012) D. E. Stec et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Oxidative stress, anti-oxidant therapies and chronic kidney disease

(2012) DAVID M SMALL et al.   NEPHROLOGY

Renal oxidative stress, oxygenation, and hypertension

(2011) Fredrik Palm et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Genetical genomics of Th1 and Th2 immune response in a baboon model of atherosclerosis risk factors

(2011) A. Vinson et al.   ATHEROSCLEROSIS

Identification of novel transcripts in annotated genomes using RNA-Seq

(2011) A. Roberts et al.   BIOINFORMATICS

Microarrays, deep sequencing and the true measure of the transcriptome

(2011) John H Malone et al.   BMC BIOLOGY

Kidney: Its impact on glucose homeostasis and hormonal regulation

(2011) Asimina Mitrakou   DIABETES RESEARCH AND CLINICAL PRACTICE

A multiplex RNA-seq strategy to profile poly(A+) RNA: Application to analysis of transcription response and 3′ end formation

(2011) Kristi Fox-Walsh et al.   GENOMICS

Wnt/β-Catenin Pathway in Podocytes Integrates Cell Adhesion, Differentiation, and Survival

(2011) Hideki Kato et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Systems biology of kidney diseases

(2011) John Cijiang He et al.   KIDNEY INTERNATIONAL

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Computational methods for transcriptome annotation and quantification using RNA-seq

(2011) Manuel Garber et al.   NATURE METHODS

Non-coding RNAs in human disease

(2011) Manel Esteller   NATURE REVIEWS GENETICS

Comparative Analysis of Human Protein-Coding and Noncoding RNAs between Brain and 10 Mixed Cell Lines by RNA-Seq

(2011) Geng Chen et al.   PLoS One

Identification of a QTL for Adipocyte Volume and of Shared Genetic Effects with Aspartate Aminotransferase

(2010) Tanushree Bose et al.   BIOCHEMICAL GENETICS

Long Noncoding RNAs with Enhancer-like Function in Human Cells

(2010) Ulf Andersson Ørom et al.   CELL

Renal lipid metabolism and lipotoxicity

(2010) Ion Alexandru Bobulescu   CURRENT OPINION IN NEPHROLOGY AND HYPERTENSION

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The baboon model (Papio hamadryas) of fetal loss: maternal weight, age, reproductive history and pregnancy outcome

(2010) Natalia E. Schlabritz-Loutsevitch et al.   JOURNAL OF MEDICAL PRIMATOLOGY

JAK/STAT signaling in renal diseases

(2010) Peter Y. Chuang et al.   KIDNEY INTERNATIONAL

Defining the transcriptome and proteome in three functionally different human cell lines

(2010) Emma Lundberg et al.   Molecular Systems Biology

Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content

(2010) Jennifer F. Hughes et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The genetic basis of kidney cancer: a metabolic disease

(2010) W. Marston Linehan et al.   Nature Reviews Urology

Identification of a microRNA signature of renal ischemia reperfusion injury

(2010) J. G. Godwin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing

(2010) Anna Wetterbom et al.   GENOME BIOLOGY

Annotating conserved and novel features of primate transcriptomes using sequencing

(2010) Philipp Khaitovich   GENOME BIOLOGY

Applications of New Sequencing Technologies for Transcriptome Analysis

(2009) Olena Morozova et al.   Annual Review of Genomics and Human Genetics

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Molecular pathways mediating differential responses to lipopolysaccharide between human and baboon arterial endothelial cells

(2009) Qiang Shi et al.   CLINICAL AND EXPERIMENTAL PHARMACOLOGY AND PHYSIOLOGY

Role of the kidney in normal glucose homeostasis and in the hyperglycaemia of diabetes mellitus: therapeutic implications

(2009) J. E. Gerich   DIABETIC MEDICINE

Quantitative Loci Regulating Plasma Levels of γ Glutamyl Transferase and Albumin and Their Genetic Correlations with Cardiovascular Risk Factors

(2009) Tanushree Bose et al.   EXPERIMENTAL BIOLOGY AND MEDICINE

CCND1 rearrangements and cyclin D1 overexpression in renal oncocytomas: frequency, clinicopathologic features, and utility in differentiation from chromophobe renal cell carcinoma

(2009) William R. Sukov et al.   HUMAN PATHOLOGY

Localization of multiple pleiotropic genes for lipoprotein metabolism in baboons

(2009) David L. Rainwater et al.   JOURNAL OF LIPID RESEARCH

Integration of genetic and genomic methods for identification of genes and gene variants encoding QTLs in the nonhuman primate

(2009) Laura A. Cox et al.   METHODS

A 'going ape' model for SUDEP?

(2009) Pasquale Striano et al.   Nature Reviews Neurology

Using high-density exon arrays to profile gene expression in closely related species

(2009) Lan Lin et al.   NUCLEIC ACIDS RESEARCH

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data

(2009) Daniel Ramsköld et al.   PLoS Computational Biology

Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness

(2009) Ana C Marques et al.   GENOME BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The effects of diabetes and aminoguanidine treatment on endothelial function in a primate model of type 1 diabetes

(2008) Belinda A. Brooks et al.   AMERICAN JOURNAL OF PRIMATOLOGY

A Genomewide Linkage Scan for Quantitative Trait Loci Influencing the Craniofacial Complex in Baboons (Papio hamadryas spp.)

(2008) R. J. Sherwood et al.   GENETICS

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Long intronic noncoding RNA transcription: Expression noise or expression choice?

(2008) Rodrigo Louro et al.   GENOMICS

Epidermal Growth Factor Receptor Signaling in the Kidney

(2008) Wynand B.W.H. Melenhorst et al.   HYPERTENSION

NF-κB Inhibits Sodium Transport via Down-regulation of SGK1 in Renal Collecting Duct Principal Cells

(2008) Sophie de Seigneux et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Non-protein coding RNA biomarkers and differential expression in cancers: a review

(2008) Massimo Mallardo et al.   JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH

Genotype-by-diet effects on co-variation in Lp-PLA2activity and LDL-cholesterol concentration in baboons fed an atherogenic diet

(2008) Amanda Vinson et al.   JOURNAL OF LIPID RESEARCH

Natural Chagas disease in four baboons

(2008) Jeff T. Williams et al.   JOURNAL OF MEDICAL PRIMATOLOGY

Podocyte-Specific Loss of Functional MicroRNAs Leads to Rapid Glomerular and Tubular Injury

(2008) J. Ho et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Podocyte-Selective Deletion of Dicer Induces Proteinuria and Glomerulosclerosis

(2008) S. Shi et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Aldosterone Activates NF- B in the Collecting Duct

(2008) V. Leroy et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Circulating microRNAs as stable blood-based markers for cancer detection

(2008) P. S. Mitchell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

(2008) M. Sultan et al.   SCIENCE

A pleiotropic QTL on 2p influences serum Lp-PLA2 activity and LDL cholesterol concentration in a baboon model for the genetics of atherosclerosis risk factors

(2007) A. Vinson et al.   ATHEROSCLEROSIS

Osteopenia and osteoporosis in adult baboons (Papio hamadryas)

(2007) L.M. Havill et al.   JOURNAL OF MEDICAL PRIMATOLOGY