Using Weakly Conserved Motifs Hidden in Secretion Signals to Identify Type-III Effectors from Bacterial Pathogen Genomes

Functional and Computational Analysis of Amino Acid Patterns Predictive of Type III Secretion System Substrates in Pseudomonas syringae

(2012) Lisa M. Schechter et al.   PLoS One

Pseudomonas syringae type III effector repertoires: last words in endless arguments

(2012) Magdalen Lindeberg et al.   TRENDS IN MICROBIOLOGY

High-accuracy prediction of bacterial type III secreted effectors based on position-specific amino acid composition profiles

(2011) Yejun Wang et al.   BIOINFORMATICS

Meta-analytic approach to the accurate prediction of secreted virulence effectors in gram-negative bacteria

(2011) Yoshiharu Sato et al.   BMC BIOINFORMATICS

Attributes of short linear motifs

(2011) Norman E. Davey et al.   Molecular BioSystems

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

(2011) Michael Remmert et al.   NATURE METHODS

Prediction of Ubiquitination Sites by Using the Composition of k-Spaced Amino Acid Pairs

(2011) Zhen Chen et al.   PLoS One

A Sorting Platform Determines the Order of Protein Secretion in Bacterial Type III Systems

(2011) M. Lara-Tejero et al.   SCIENCE

Dynamic Evolution of Pathogenicity Revealed by Sequencing and Comparative Genomics of 19 Pseudomonas syringae Isolates

(2011) David A. Baltrus et al.   PLoS Pathogens

T3SEdb: data warehousing of virulence effectors secreted by the bacterial Type III Secretion System

(2010) Daniel Tay et al.   BMC BIOINFORMATICS

Computational prediction of type III secreted proteins from gram-negative bacteria

(2010) Yang Yang et al.   BMC BIOINFORMATICS

Computational Prediction of Type III and IV Secreted Effectors in Gram-Negative Bacteria

(2010) Jason E. McDermott et al.   INFECTION AND IMMUNITY

Identification of a Family of Effectors Secreted by the Type III Secretion System That Are Conserved in Pathogenic Chlamydiae

(2010) Sandra Muschiol et al.   INFECTION AND IMMUNITY

A multi-pronged search for a common structural motif in the secretion signal of Salmonella enterica serovar Typhimurium type III effector proteins

(2010) Garry W. Buchko et al.   Molecular BioSystems

Common Themes in the Design and Function of Bacterial Effectors

(2009) Jorge E. Galán   Cell Host & Microbe

Roadmap for future research on plant pathogen effectors

(2009) JAMES R. ALFANO   MOLECULAR PLANT PATHOLOGY

The Universal Protein Resource (UniProt) in 2010

(2009)   NUCLEIC ACIDS RESEARCH

Prediction of Type III Secretion Signals in Genomes of Gram-Negative Bacteria

(2009) Martin Löwer et al.   PLoS One

Prediction of palmitoylation sites using the composition of k-spaced amino acid pairs

(2009) X.-B. Wang et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Accurate Prediction of Secreted Substrates and Identification of a Conserved Putative Secretion Signal for Type III Secretion Systems

(2009) Ram Samudrala et al.   PLoS Pathogens

Sequence-Based Prediction of Type III Secreted Proteins

(2009) Roland Arnold et al.   PLoS Pathogens

De novo identification of highly diverged protein repeats by probabilistic consistency

(2008) A. Biegert et al.   BIOINFORMATICS

Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition of k-spaced amino acid pairs

(2008) Yong-Zi Chen et al.   BMC BIOINFORMATICS

Prediction of protein structural class using novel evolutionary collocation-based sequence representation

(2008) Ke Chen et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Prediction of integral membrane protein type by collocated hydrophobic amino acid pairs

(2008) Ke Chen et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY