Transcriptome Analysis of Cytokinin Response in Tomato Leaves

Gene Regulation by Cytokinin in Arabidopsis

(2012) Wolfram G. Brenner et al.   Frontiers in Plant Science

Cytokinin Modulates Endocytic Trafficking of PIN1 Auxin Efflux Carrier to Control Plant Organogenesis

(2011) Peter Marhavý et al.   DEVELOPMENTAL CELL

Solanum lycopersicum cytokinin response factor (SlCRF) genes: characterization of CRF domain-containing ERF genes in tomato

(2011) Xiuling Shi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cytokinin-mediated source/sink modifications improve drought tolerance and increase grain yield in rice under water-stress

(2011) Zvi Peleg et al.   PLANT BIOTECHNOLOGY JOURNAL

Tissue- and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation

(2011) Antonio J. Matas et al.   PLANT CELL

Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development

(2011) Johannes Rohrmann et al.   PLANT JOURNAL

Cytokinin antagonizes ABA suppression to seed germination of Arabidopsis by downregulating ABI5 expression

(2011) Yanping Wang et al.   PLANT JOURNAL

The CRF domain defines Cytokinin Response Factor proteins in plants

(2010) Aaron M Rashotte et al.   BMC PLANT BIOLOGY

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

Cytokinin Regulates Compound Leaf Development in Tomato

(2010) Eilon Shani et al.   PLANT CELL

Perturbation of Indole-3-Butyric Acid Homeostasis by the UDP-Glucosyltransferase UGT74E2 Modulates Arabidopsis Architecture and Water Stress Tolerance

(2010) V. B. Tognetti et al.   PLANT CELL

A putative transporter is essential for integrating nutrient and hormone signaling with lateral root growth and nodule development inMedicago truncatula

(2010) Craig R. Yendrek et al.   PLANT JOURNAL

The Submergence Tolerance Regulator Sub1A Mediates Stress-Responsive Expression of AP2/ERF Transcription Factors

(2010) K.-H. Jung et al.   PLANT PHYSIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

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Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond

(2009) Ryan Lister et al.   CURRENT OPINION IN PLANT BIOLOGY

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

The PLASTID DIVISION1 and 2 Components of the Chloroplast Division Machinery Determine the Rate of Chloroplast Division in Land Plant Cell Differentiation

(2009) K. Okazaki et al.   PLANT CELL

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process

(2008) Marino Expósito-Rodríguez et al.   BMC PLANT BIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Type B Response Regulators of Arabidopsis Play Key Roles in Cytokinin Signaling and Plant Development

(2008) R. D. Argyros et al.   PLANT CELL

The Transcriptional Repressor ARR1-SRDX Suppresses Pleiotropic Cytokinin Activities in Arabidopsis

(2008) A. Heyl et al.   PLANT PHYSIOLOGY

The role of JAR1 in Jasmonoyl-l-isoleucine production during Arabidopsis wound response

(2008) Walter P. Suza et al.   PLANTA

A Conserved Molecular Framework for Compound Leaf Development

(2008) Thomas Blein et al.   SCIENCE