De Novo Assembly of Mud Loach (Misgurnus anguillicaudatus) Skin Transcriptome to Identify Putative Genes Involved in Immunity and Epidermal Mucus Secretion

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)

(2012) Dejun Li et al.   BMC GENOMICS

Transcriptome analysis of head kidney in grass carp and discovery of immune-related genes

(2012) Jin Chen et al.   BMC Veterinary Research

Transcriptome Analysis of Silver Carp (Hypophthalmichthys molitrix) by Paired-End RNA Sequencing

(2012) B. Fu et al.   DNA RESEARCH

Molecular cloning and expression of two β-defensin and two mucin genes in common carp (Cyprinus carpio L.) and their up-regulation after β-glucan feeding

(2012) Maria van der Marel et al.   FISH & SHELLFISH IMMUNOLOGY

Exploring the Transcriptome of Atlantic Salmon (Salmo salar) Skin, a Major Defense Organ

(2012) Giulia Micallef et al.   MARINE BIOTECHNOLOGY

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

Characterization of Common Carp Transcriptome: Sequencing, De Novo Assembly, Annotation and Comparative Genomics

(2012) Peifeng Ji et al.   PLoS One

High-Throughput Sequence Analysis of Turbot (Scophthalmus maximus) Transcriptome Using 454-Pyrosequencing for the Discovery of Antiviral Immune Genes

(2012) Patricia Pereiro et al.   PLoS One

Transcriptome Analysis and SSR/SNP Markers Information of the Blunt Snout Bream (Megalobrama amblycephala)

(2012) Zexia Gao et al.   PLoS One

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome

(2011) Bonnie A Fraser et al.   BMC GENOMICS

Analysis of the Asian Seabass Transcriptome Based on Expressed Sequence Tags

(2011) J. H. Xia et al.   DNA RESEARCH

Molecular characterization of hepcidin gene from mud loach (Misgurnus mizolepis; Cypriniformes)

(2011) Yoon Kwon Nam et al.   FISH & SHELLFISH IMMUNOLOGY

Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition

(2011) Håvard Aanes et al.   GENOME RESEARCH

Antioxidant and Antiproliferative Activities of Loach (Misgurnus anguillicaudatus) Peptides Prepared by Papain Digestion

(2011) Lijun You et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

A unique epidermal mucus lectin identified from catfish (Silurus asotus): first evidence of intelectin in fish skin slime

(2011) S. Tsutsui et al.   JOURNAL OF BIOCHEMISTRY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel

(2010) Alessandro Coppe et al.   BMC GENOMICS

Transcriptome and expression profiling analysis revealed changes of multiple signaling pathways involved in immunity in the large yellow croaker during Aeromonas hydrophila infection

(2010) Yinnan Mu et al.   BMC GENOMICS

De novo characterization of a whitefly transcriptome and analysis of its gene expression during development

(2010) Xiao-Wei Wang et al.   BMC GENOMICS

‘Fish matters’: the relevance of fish skin biology to investigative dermatology

(2010) Sebastian Rakers et al.   EXPERIMENTAL DERMATOLOGY

Optimization of de novo transcriptome assembly from next-generation sequencing data

(2010) Y. Surget-Groba et al.   GENOME RESEARCH

Humane killing of fishes for scientific research: a comparison of two methods

(2010) J. J. Blessing et al.   JOURNAL OF FISH BIOLOGY

Changes in Atlantic salmon Salmo salar mucus components following short- and long-term handling stress

(2010) R. H. Easy et al.   JOURNAL OF FISH BIOLOGY

RNA-Seq gene expression estimation with read mapping uncertainty

(2009) Bo Li et al.   BIOINFORMATICS

Novel l-amino acid oxidase with antibacterial activity against methicillin-resistant Staphylococcus aureus isolated from epidermal mucus of the flounder Platichthys stellatus

(2009) Kosuke Kasai et al.   FEBS Journal

Myxinidin, A Novel Antimicrobial Peptide from the Epidermal Mucus of Hagfish, Myxine glutinosa L.

(2009) Sangeetha Subramanian et al.   MARINE BIOTECHNOLOGY

Evaluation of non-specific immune components from the skin mucus of olive flounder (Paralichthys olivaceus)

(2008) K.J. Palaksha et al.   FISH & SHELLFISH IMMUNOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Recent insights into the biological roles of mucin-type O-glycosylation

(2008) E Tian et al.   GLYCOCONJUGATE JOURNAL

Protective effect of Misgurnus anguillicaudatus polysaccharide on immunological liver injury in mice

(2008) Chuanguang Qin et al.   INTERNATIONAL IMMUNOPHARMACOLOGY

Structure–activity relations of parasin I, a histone H2A-derived antimicrobial peptide

(2008) Young Sook Koo et al.   PEPTIDES