Prediction and Analysis of Antibody Amyloidogenesis from Sequences

Amyloid fibrillation in native and chemically-modified forms of carbonic anhydrase II: Role of surface hydrophobicity

(2012) Ali Es-haghi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

POPISK: T-cell reactivity prediction using support vector machines and string kernels

(2011) Chun-Wei Tung et al.   BMC BIOINFORMATICS

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Charge Distribution and Amyloid Fibril Formation: Insights from Genetically Engineered Model Systems

(2010) Natalya I. Topilina et al.   BIOMACROMOLECULES

Using simple artificial intelligence methods for predicting amyloidogenesis in antibodies

(2010) Maria Pamela C David et al.   BMC BIOINFORMATICS

Predicting siRNA potency with random forests and support vector machines

(2010) Liangjiang Wang et al.   BMC GENOMICS

Letter to the Editor: Stability of Random Forest importance measures

(2010) M. L. Calle et al.   BRIEFINGS IN BIOINFORMATICS

Exploring the sequence determinants of amyloid structure using position-specific scoring matrices

(2010) Sebastian Maurer-Stroh et al.   NATURE METHODS

Amyloid Fibril-Like Structure Underlies the Aggregate Structure across the pH Range for β -Lactoglobulin

(2009) Mark R.H. Krebs et al.   BIOPHYSICAL JOURNAL

Enriched random forests

(2008) D. Amaratunga et al.   BIOINFORMATICS

Computational identification of ubiquitylation sites from protein sequences

(2008) Chun-Wei Tung et al.   BMC BIOINFORMATICS

Conditional Variable Importance for Random Forests

(2008) Carolin Strobl et al.   BMC BIOINFORMATICS

The Zyggregator method for predicting protein aggregation propensities

(2008) Gian Gaetano Tartaglia et al.   CHEMICAL SOCIETY REVIEWS

Molecular engineering and design of therapeutic antibodies

(2008) Leonard G Presta   CURRENT OPINION IN IMMUNOLOGY

Prediction of Aggregation-Prone Regions in Structured Proteins

(2008) Gian Gaetano Tartaglia et al.   JOURNAL OF MOLECULAR BIOLOGY