Identification of Human HK Genes and Gene Expression Regulation Study in Cancer from Transcriptomics Data Analysis

Hallmarks of Cancer: The Next Generation

(2011) Douglas Hanahan et al.   CELL

Extensive increase of microarray signals in cancers calls for novel normalization assumptions

(2011) Dong Wang et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

The Accumulation of Gene Regulation Through Time

(2011) Maria Warnefors et al.   Genome Biology and Evolution

Evolution of Exon-Intron Structure and Alternative Splicing

(2011) Tomasz E. Koralewski et al.   PLoS One

Large scale comparison of global gene expression patterns in human and mouse

(2011) Xiangqun Zheng-Bradley et al.   GENOME BIOLOGY

Towards reliable isoform quantification using RNA-SEQ data

(2010) Brian E Howard et al.   BMC BIOINFORMATICS

Gene expression in histologically normal epithelium from breast cancer patients and from cancer-free prophylactic mastectomy patients shares a similar profile

(2010) K Graham et al.   BRITISH JOURNAL OF CANCER

Tissue-specific disallowance of housekeeping genes: The other face of cell differentiation

(2010) L. Thorrez et al.   GENOME RESEARCH

RNA sequencing reveals the role of splicing polymorphisms in regulating human gene expression

(2010) E. Lalonde et al.   GENOME RESEARCH

Housekeeping genes; expression levels may change with density of cultured cells

(2010) Samantha Greer et al.   JOURNAL OF IMMUNOLOGICAL METHODS

A global map of human gene expression

(2010) Margus Lukk et al.   NATURE BIOTECHNOLOGY

An integrated transcriptomic and computational analysis for biomarker identification in gastric cancer

(2010) Juan Cui et al.   NUCLEIC ACIDS RESEARCH

Cancer Reduces Transcriptome Specialization

(2010) Octavio Martínez et al.   PLoS One

A Novel Role for Minimal Introns: Routing mRNAs to the Cytosol

(2010) Jiang Zhu et al.   PLoS One

A Comparative Analysis of Gene-Expression Data of Multiple Cancer Types

(2010) Kun Xu et al.   PLoS One

RNA Processing and Export

(2010) S. Hocine et al.   Cold Spring Harbor Perspectives in Biology

The Next Generation Becomes the Now Generation

(2010) Diego A. Martinez et al.   PLoS Genetics

Statistical inferences for isoform expression in RNA-Seq

(2009) Hui Jiang et al.   BIOINFORMATICS

Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes

(2009) Min Zhang et al.   BIOINFORMATICS

γ-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates

(2009) Da-Peng Wang et al.   Biology Direct

Cellular senescence: hot or what?

(2009) Gerard I Evan et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Messenger RNA Export from the Nucleus: A Series of Molecular Wardrobe Changes

(2009) Seth M. Kelly et al.   TRAFFIC

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data

(2009) Daniel Ramsköld et al.   PLoS Computational Biology

Apparently low reproducibility of true differential expression discoveries in microarray studies

(2008) Min Zhang et al.   BIOINFORMATICS

How many human genes can be defined as housekeeping with current expression data?

(2008) Jiang Zhu et al.   BMC GENOMICS

TGFβ in Cancer

(2008) Joan Massagué   CELL

Identification of copy number gain and overexpressed genes on chromosome arm 20q by an integrative genomic approach in cervical cancer: Potential role in progression

(2008) Luigi Scotto et al.   GENES CHROMOSOMES & CANCER

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

(2008) Qun Pan et al.   NATURE GENETICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

On the nature of human housekeeping genes

(2008) Jiang Zhu et al.   TRENDS IN GENETICS